Secondary Analysis Software - Thermo Scientific appliedbiosystems SeqStudio Flex Series User Manual

Chapter 1 Product information
1
About the SeqStudio ™

Secondary analysis software

Secondary analysis software is available for desktop computers and on Thermo Fisher
Visit apps.thermofisher.com
For information on using these applications to perform automated analysis, see "Automated cloud
analysis with secondary analysis software"
Secondary analysis applications on Thermo Fisher
Application type
Sequencing Quality Check (QC) module
Variant Analysis (VA) module
Next‑generation Confirmation
Fragment analysis
50
Flex Series Instrument Software v1.0
for the latest available secondary analysis applications.
Software
(NGC) module
™
Peak Scanner Software
Microsatellite Analysis
Software
SeqStudio
on page 202.
™
• Automatically checks sequence trace quality.
• Provides a results summary that is based on quality
parameter settings.
• Auto-flags lower-quality traces for further inspection.
• Finds variants in samples that are sequenced on Applied
™
Biosystems genetic analyzers.
• Reports variants at genomic coordinates.
• Allows export of variant calls in standard Variant Call
Format.
• Confirms next-generation sequencing (NGS) variants
using capillary electrophoresis (CE) technology.
• Allows visualization of the variants that are detected by
both NGS and CE platforms.
• Allows export of confirmed variants in standard Variant
Call Format.
Performs peak sizing.
Performs peak sizing and genotyping on microsatellite
samples.
™ Flex Series Genetic Analyzer with Instrument Software v1.0 User Guide
™
Connect.
Connect
Description