Thermo Scientific appliedbiosystems SeqStudio Flex Series User Manual page 571

purification 73
troubleshooting 512
volume requirements 73
sample name, assign to well 93
sample plate. See plate
Sample QC, determining 172
sample type, assign to well 93
save location, default
for plate file in Plate Manager 119
for results on instrument 468
scheduled maintenance
notifications 354
tasks 354
screen locking. See automatic screen locking
secondary analysis software 50, 109
self tests 485
send plate file to instrument
cancel 126
failed 126
start 126
septa
cathode buffer container 540
ensure proper installation on CBC 71
plate, catalog numbers 539
septum, check alignment and seating on loaded
plate 82
sequence quality 178
sequencing
See also install run
dye sets 530
electropherogram 175
install run 328
reagents, catalog numbers 540
results 176
results, Remote Monitoring software 192
run module, read lengths and run times 526
troubleshooting 490, 512, 513, 517
See also install run
sequencing analysis settings 291
serial number, instrument 452
shut down the instrument, maintenance wizard 420
sign in
cloud profile 222
create local profile 29, 55, 448
if another user is signed in 34, 60
options 29, 55
PIN, change 225
switch user 33, 59
troubleshooting 520
when SAE is enabled 244
with local profile 31, 53, 57
sign out of instrument 33, 59
signal optimization factor in spatial calibration 306
Size Quality, defined 180
SeqStudio ™ Flex Series Genetic Analyzer with Instrument Software v1.0 User Guide
size standard normalization
factor and thresholds 273
overview 278
size standards provided 275
target 273
size standard quality
check in Remote Monitoring software 478
check on instrument 476
size standards
catalog numbers 541
defined 275
in analysis settings 295
library 275
normalization 275
select in plate file (fragment analysis only) 89
Sizing software. See Microsatellite Analysis software
Slope Thresholds Peak Start and End 295
Smart Help 473
smart phone. See mobile device
smoothing 295
software
See also Instrument software
troubleshooting 521
update 462
See also Instrument software
spatial calibration
export report 306
export results 306
export results or reports 309
maintenance wizard 412
perform 305
purpose 304
results 306
signal optimization factor 306
signing 246
when to perform 304
speaker
adjust volume 72
self test 485
specifications, RFID 544
spectral autocalibration for each capillary position
150, 151
spectral calibration
auto retry 322, 323
borrowing disabled 323
borrowing enabled 322
condition number 320
custom dye set 314
custom dye set, create 286
dye set E example 324
dye set Z example 324
estimated run time 313
examples 324
history 326
Index
571