Thermo Scientific appliedbiosystems SeqStudio Flex Series Manuals

Manuals and User Guides for Thermo Scientific appliedbiosystems SeqStudio Flex Series. We have 1 Thermo Scientific appliedbiosystems SeqStudio Flex Series manual available for free PDF download: User Manual

Thermo Scientific appliedbiosystems SeqStudio Flex Series User Manual (574 pages)

Genetic Analyzer with Instrument Software v1.0

Brand: Thermo Scientific | Category: Measuring Instruments | Size: 14 MB

Table of Contents
3
CHAPTER 1 Product Information

16
CHAPTER 2 Get Started

53
CHAPTER 3 Prepare the Samples

73
CHAPTER 4 Create a Plate File on the Instrument

83
CHAPTER 5 Create a Plate File in the Plate Manager Software

95
CHAPTER 6 Start and Monitor a Run

138
CHAPTER 7 View Results on the Instrument

169
CHAPTER 8 Use the Remote Monitoring Software to Monitor Runs

182
CHAPTER 9 Use the Instrument with Thermo Fisher

211
CHAPTER 10 Use the Instrument with the Security, Auditing, and E-Signature (SAE) V2.1 Module

238
CHAPTER 11 Manage Library Resources on the Instrument

252
- Overview of Libraries
  253
- General Library Procedures
  255
- Create a New Entry from a Factory-Provided or Locked Entry
  255
- Lock or Unlock a Library Entry
  255
- Copy a Library Entry
  255
- Edit a Library Entry
  256
- Import a Library Entry
  256
- Export a Library Entry
  256
- Filter Library Lists
  257
- Delete a Library Entry
  258
- Plate Files Library
  258
- Plate File Definition
  258
- Create a Plate File
  259
- Define Custom Fields
  262
- Export or Delete a Plate File
  264
- Import a Plate Setup from a CSV or PSM File
  264
- Plate File Properties Tab
  265
- Plate File Plate Tab
  267
- Plate File Edit Injection Properties Screen
  268
- Plate File Edit Well Properties Screen (Sample Name Entry)
  271
- Run Modules Library
  272
- Run Module Overview
  272
- Run Module Provided
  272
- Create a New Run Module
  272
- Run Module Settings
  273
- Size Standards Library
  275
- Size Standard Overview
  275
- Size Standard Definition Files Provided
  275
- Create a New Size Standard
  276
- Modify a Factory-Provided Normalization Size Standard
  277
- Size Standard Normalization Feature
  278
- File Name Conventions Library
  278
- File Name Convention Overview
  278
- Create a New File Name Convention
  279
- File Name Convention Settings
  282
- Injection Protocols Library
  283
- Injection Protocol Overview
  283
- Create a New Injection Protocol
  283
- Injection Protocol Settings
  284
- Dye Sets Library
  285
- Dye Set Overview
  285
- Create a New Dye Set
  285
- Create a Custom Dye Set
  286
- Dye Set Settings
  286
- Analysis Settings Library
  288
- Analysis Settings Overview
  288
- Create a New Analysis Settings
  289
- Analysis Settings-Sequencing
  291
- Analysis Settings-Fragment Analysis
  295
- Results Groups Library
  301
- Results Group Overview
  301
- Create a New Results Group
  302
CHAPTER 12 Run Calibrations and Install Checks

304
- Run a Spatial Calibration
  304
- Spatial Calibration Overview
  304
- When to Perform a Spatial Calibration
  304
- Perform a Spatial Calibration
  305
- Evaluate the Spatial Calibration Results
  306
- Example Spatial Profiles
  308
- Export Spatial Calibration Results or Report
  309
- Run a Spectral Calibration
  310
- Overview of Spectral Calibration
  310
- When to Perform a Spectral Calibration
  311
- System Dye Sets Versus Custom Dye Sets
  312
- Using Bigdye
  312
- Estimated Spectral Calibration Run Times
  313
- Prepare for Custom Dye Set Spectral Calibration
  314
- Prepare for Spectral Calibration
  314
- Perform a Spectral Calibration
  316
- View Spectral Calibration Results
  317
- Example Spectral Calibration Data
  324
- Export Spectral Calibration Logs or Report
  325
- View and Export the Spectral Calibration History
  326
- Perform an Install Run
  328
- Overview of Install Run
  329
- When to Perform an Install Run
  329
- Estimated Install Run Times
  330
- Prepare for the Install Run
  330
- Perform an Install Run
  333
- View Sequencing Install Run Results
  334
- View Fragment Analysis Install Run Results
  347
- View, Export, or Delete an Install Run History
  352
CHAPTER 13 Maintain the Instrument

354
CHAPTER 14 Manage the Software (Instrument)

439
APPENDIX A Troubleshooting

471
APPENDIX B Run Modules and Dye Sets

526
- Run Modules, Read Lengths, Size Ranges, and Run Times
  526
- Dye Sets
  530
APPENDIX C Instrument Specifications

531
APPENDIX D Catalog Numbers

539
- Plates Bases Retainers and Septa
  539
- Instrument Consumables
  540
- Sequencing Analysis Reagents and Consumables
  540
- Fragment Analysis Reagents
  541
APPENDIX E Radio Frequency Identification (RFID) Technology

542
- RFID Precautions for Use
  542
- Locations of RFID Read/Write Units
  543
- RFID Function
  543
- RFID Specifications
  544
- RFID Troubleshooting
  545
- Symbols on this Instrument
  546
APPENDIX F Safety

547
- Standard Safety Symbols
  547
- Location of Safety Labels
  547
- Control and Connection Symbols
  549
- Conformity Symbols
  550
- Safety Information for Instruments Not Manufactured by Thermo Fisher Scientific
  550
- Instrument Safety
  550
- General
  550
- Physical Injury
  551
- Electrical Safety
  552
- Cleaning and Decontamination
  553
- Instrument Component and Accessory Disposal
  553
- Laser Safety
  554
- Safety and Electromagnetic Compatibility (EMC) Standards
  554
- Safety Standards
  555
- EMC Standards
  555
- Environmental Design Standards
  556
- Radio Compliance Standards
  556
- Chemical Safety
  558
- Biological Hazard Safety
  559
APPENDIX G Documentation and Support

560
- Related Documentation
  560
- Customer and Technical Support
  561
- Limited Product Warranty
  561
- Index
  562

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Thermo Scientific appliedbiosystems SeqStudio Flex Series Manuals

Thermo Scientific appliedbiosystems SeqStudio Flex Series User Manual (574 pages)

Table of Contents

CHAPTER 1 Product Information

CHAPTER 2 Get Started

CHAPTER 3 Prepare the Samples

CHAPTER 4 Create a Plate File on the Instrument

CHAPTER 5 Create a Plate File in the Plate Manager Software

CHAPTER 6 Start and Monitor a Run

CHAPTER 7 View Results on the Instrument

CHAPTER 8 Use the Remote Monitoring Software to Monitor Runs

CHAPTER 9 Use the Instrument with Thermo Fisher

CHAPTER 10 Use the Instrument with the Security, Auditing, and E-Signature (SAE) V2.1 Module

CHAPTER 11 Manage Library Resources on the Instrument

CHAPTER 12 Run Calibrations and Install Checks

CHAPTER 13 Maintain the Instrument

CHAPTER 14 Manage the Software (Instrument)

APPENDIX A Troubleshooting

APPENDIX B Run Modules and Dye Sets

APPENDIX C Instrument Specifications

APPENDIX D Catalog Numbers

APPENDIX E Radio Frequency Identification (RFID) Technology

APPENDIX F Safety

APPENDIX G Documentation and Support

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