Thermo Scientific appliedbiosystems SeqStudio Flex Series User Manual page 109

Secondary analysis cloud applications on Thermo Fisher
The secondary analysis cloud applications listed below are available for cloud analysis.
Visit apps.thermofisher.com
Secondary analysis applications on Thermo Fisher
Analysis
Sequencing Quality Check (QC) module
Variant Analysis (VA) module
Next‑generation Confirmation
Fragment analysis
SeqStudio ™ Flex Series Genetic Analyzer with Instrument Software v1.0 User Guide
for the latest available secondary analysis applications.
App
(NGC) module
™
Peak Scanner Software
Microsatellite Analysis
Software
Chapter 5 Create a plate file in the Plate Manager software
Get started with the Plate Manager software (cloud)
™ Connect
• Automatically checks sequence trace quality.
• Provides a results summary that is based on quality
parameter settings.
• Auto-flags lower-quality traces for further inspection.
• Finds variants in samples that are sequenced on Applied
™
Biosystems genetic analyzers.
• Reports variants at genomic coordinates.
• Allows export of variant calls in standard Variant Call
Format.
• Confirms next-generation sequencing (NGS) variants
using capillary electrophoresis (CE) technology.
• Allows visualization of the variants that are detected by
both NGS and CE platforms.
• Allows export of confirmed variants in standard Variant
Call Format.
Performs peak sizing.
Performs peak sizing and genotyping on microsatellite
samples.
™
Connect
Description
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