Thermo Scientific appliedbiosystems SeqStudio Flex Series User Manual page 132

Chapter 5 Create a plate file in the Plate Manager software
5
Additional functions in the Plate Manager software
Manage libraries
Overview of libraries
The following libraries are available in the software.
These libraries are also available on the instrument. For information on how the instrument imports
library entries from plate files that are created in the Plate Manager software, see "PSM and CSV plate
files for import into the instrument"
For information on the settings in library items, see Chapter 11, "Manage library resources on the
instrument".
Library
Plate files
Injection protocols
Run modules
Dye sets
Size standards (fragment
analysis only)
Analysis settings
132
on page 86.
Not present in the Plate Manager software. See "Manage plate files in the Plate
Manager software" on page
An injection protocol contains a run module, dye set, size standard (fragment
analysis only), and analysis settings.
An injection protocol is an optional item in a plate file. You can alternatively select the
individual items that are contained in an injection protocol.
A run module contains the parameters that control the instrument during data
collection.
A dye set defines the number, dye color, and migration order of the dye peaks in the
sample.
A size standard defines the sizes of known fragments. It is used to generate a
standard curve. The standard curve is used to determine the sizing of unknown
samples.
Analysis settings define basecalling (sequencing) and sizing (fragment analysis)
parameters.
SeqStudio ™ Flex Series Genetic Analyzer with Instrument Software v1.0 User Guide
Description
131.