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MAN-10152-01 for software v2.5
Slide and Scan Management
Scan Cards
A slide record that has scan parameters associated with it will automatically generate a Scan
Card. When the scan is complete, the scan card will include the scan image and a summary of
the scan's status and info.
Select a single slide from the list in the Navigation window. The Slide Record and any Scan
Cards for this slide will appear
Hide or show ROIs using the slider.
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Scan Parameters to view the Scan Parameters window.
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Scan Workspace to open the Scan Workspace window.
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The listed Status for the scan will inform on what stage it is in according to the GeoMx system:
Defined: scan is set up.
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Scanned: scanning complete.
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Annotated: ROIs selected.
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Aborted: scanning or collection was aborted.
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Collection Complete: collection complete, rows not finalized.
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Awaiting Readout: rows finalized.
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Calibration Needed: the system needs a zipped calibration file for applicable Hyb Code lot
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to be uploaded - find at
dsp-calibration-files/. See
Readout Complete: counts uploaded, ready for Data Analysis
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If the scan's status is Readout Complete, the Add to Queue button will be active in the upper
right of the scan card. Click the Add to Queue button to send this scan's counts to the Data
Analysis queue. See the
FOR RESEARCH USE ONLY. Not for use in diagnostic procedures.
Figure 61: Navigation window, slide record, and scan card
(see Figure
61). You may select:
https://nanostring.com/products/geomx-digital-spatial-profiler/geomx-
Uploading Counts on page
GeoMx DSP Data Analysis User Manual
GeoMx DSP Instrument User Manual
65.
(MAN-10154).
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