Table of Contents
Advertisement
GeoMx DSP Instrument User Manual
Finalizing
1. To finalize a plate, click on the plate icon area at the lower
right of the GeoMx DSP Control Center
If the plate is not currently on the instrument, enter its
barcode.
After collection, the wells of the plate icon in the lower
l
right of the Control Center should appear green for
each collected well. Refresh (F5) to update the display.
After Finalizing the plate, the entire row should appear
green.
2. The Plate Information or Finalize Plate window will appear:
For NGS readout:
The Plate Information window provides a table
summarizing the status of each row of the collection
plate
(see Figure
51).
Figure 51: Plate Information & Readout Group window
1. Click Readout Group to see a list of available
readout groups.
2. Select the appropriate Illumina platform from the
Counting Device Model menu.
3. Choose Single or Paired Read.
4. Enter read length 27 into the Read Length field.
5. Choose the correct i5 Sequence Orientation
Table
3).
FOR RESEARCH USE ONLY. Not for use in diagnostic procedures.
62
MAN-10152-01 for software v2.5
(see Figure
50).
Figure 50: plate icon in GeoMx DSP
For nCounter readout:
The Finalize Plate window provides a table
summarizing the status of each row of the
collection plate
Figure 52: Finalize Plate window
1. Enter the GeoMx Hyb Code Pack lot
number
(see Figure 53)
downstream nCounter processing and
click the Update button. If you do not
know the lot number, you may skip this
field and enter it when you upload
nCounter counts.
(see
Figure 53: Hyb Code Pack lot number
Control Center
(see Figure
52).
to be used in
Advertisement
Table of Contents
