About This Manual - Newport iServer MicroServer iTHX-M Operator's Manual

About this Manual

4
Affymetrix GeneChip ®
• A Virtual Array feature, which allows the 100K Array Set and/or
500K Array Set to be managed as a single-array data set
• The FileSets feature, which allows customized groupings of
samples from multiple projects
This manual presents information about the GTYPE software in the
following chapters and appendices:
• Chapter 1, GTYPE
with walk-throughs showing different operations.
• Chapter 2, Getting
GTYPE, how to start GTYPE, and the interface components.
• Chapter 3, Working with
intensity data in the Image window.
• Chapter 4, Analyzing Cell Intensity
cell intensity data for Mapping and GenFlex
• Chapter 5, Mapping Analysis
window that displays results for MPAM, DM, and BRLMM
mapping array analysis.
• Chapter 6, Working with Mapping
working with MPAM, DM, and BRLMM mapping algorithm
analysis results.
• Chapter 7, Universal Tag
results for GenFlex
• Chapter 8, Probe Intensity
intensity values for particular probe sets for mapping assays.
• Chapter 9, NetAffx
download NetAffx annotations for the mapping analysis results.
• Chapter 10, Reports: Describes how to generate and view reports
for the analyses performed in GTYPE.
Genotyping Analysis Software User's Guide
Overview: Introduces the GTYPE software,
Started: Describes the options for using
Images: Describes how to view the cell
Data: Describes how to analyze
Window: Describes the analysis
Data: Describes the tools for
Window: Describes the display of analysis
®
Tag assays.
Window: Describes how to view the probe
™
Annotations: Describes how to select and
®
Tag assays.