Newport iServer MicroServer iTHX-M Operator's Manual page 226

Figure 6.35
Sample Match Report results
218
Affymetrix GeneChip ®
Results
The Results (Figure 6.35)
legends:
Mismatch Code Summary
Comparison Results
Chp1
Chp2
ChpType1
ChpType2
GTYPEeGen1
GTYPEGen2
NumberOfCalledSNP
NumberOfMatchSNP
IBSMetric
Has problem
Genotyping Analysis Software User's Guide
of the comparisons are listed below the
Numbers of different types of conflicts discovered.
Listing of the chip comparisons with details of problems:
Chip 1 filename
Chip 2 filename
Array type used in the experiment for Chip 1.
Array type used in the experiment for Chip 2.
Gender called by GTYPE for Chip 1.
Gender called by GTYPE for Chip2.
Number of SNPs used to calculate the Mismatch score
Number of called SNPS that matched between samples.
Mismatch score (also known as Identity by State, or IBS
metric) for the chip pair (for more information, see
Sample Mismatch Algorithm, on page
A code for the detection of problems: Not applicable for
Sample Match reports.
379).