Newport iServer MicroServer iTHX-M Operator's Manual page 412

conventions used 6
online 8
DSBound
333
DTR ratio
147, 155
Dynamic Model Mapping algo-
rithm
337, 379
Dynamic Model Mapping Anal-
ysis window
export to tabular format 159
E
experiment
renaming 69
experiment information file
(*.exp) 391
Export As dialog box
160
Export File List dialog box
exporting data
for Dynamic Model Mapping
Analysis
tabular format 159
for Probe Intensity window
274
for Universal Tag arrays 256
exporting tables
Microsoft Excel file format
160
F
feature
319
FemaleAttributeValue
file list
126
exporting 126
importing 127
file types
391
cell intensity data (*.cel) 391
chip (*.chp) 391
data (*.dat) 391
data (*.txt) 392
experiment information
(*.exp) 391
probe information (library)
404
Affymetrix GeneChip
391
report file (*.rpt) 392
files
opening 67
viewing information 62
FileSets
4
Filter categories
Add dialog box 121
Analyze dialog box 112
Filters dialog box 53
Filters applied notice
Filters dialog box
G
GCOS
experiment assigned in
GCOS 60
126
See GeneChip Operating
System (GCOS)
GCOS Server
installing GTYPE server
components 314
selecting 51
gender attribute parameters
130
assigning in GCOS 131
defining in GDAS 132
GenderAttributeName
GeneChip Operating System
(GCOS)
GeneHunter output files
333
generating reports
grid
83, 104
GTYPE
installation 308, 314
starting 50
GTYPE help
GTYPE server components for
GCOS Server
H
HCRBound
® Genotyping Analysis Software User's Guide
61
60
50, 307
333
13, 49
229
293
8
314
330, 333
help
8
heterozygosity
247
loss of heterozygosity analy-
sis 247
heterozygote call ratio (HCR)
330, 333
highlight colors
images 103
hybridization
See Universal Tag analysis
I
IBS 208, 379
Identity by State 208, 379
image settings
101
color 102
grid 104
highlight colors 103
intensity range 102
Image window
opening multiple windows
81
task bar 83
images
adjusting current image set-
tings 84
adjusting global settings 85
color settings 86
highlight colors 88
intensity range 86
viewing 79
Import File List dialog box
installing GTYPE
308, 314
intensity data
in Image window 92
in Probe Intensity window
263
Intensity Plot
268
intensity range 102
IUPAC base codes 387
127