Newport iServer MicroServer iTHX-M Operator's Manual page 248

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Affymetrix GeneChip ®
The following features apply only to GeneHunter open source
software (Figure
Figure 6.50
Sample attributes for GeneHunter open source software export
Affection Status:
Disease Freq of B
Allele
Genotype
Penetrances:
AA
AB
BB
Penetrances of AA = 0, AB = 1, and BB = 1 describe a fully
dominant disease locus. Penetrances of AA = 0, AB = 0, and
BB = 1 describe a recessive disease locus.
Select the template name from the Template Name drop-down
A.
list.
For each of the attributes you wish to export:
B.
1. Select the attribute in the Template Attributes box.
Genotyping Analysis Software User's Guide
6.50):
Additional information about the disease status, including:
The disease frequency. The BB genotype is the disease allele.
The frequency is between 0 and 1.
Probability that a particular genotype will cause the disease.
The probability that the AA genotype will cause the disease.
The probability that the AB genotype will cause the disease.
The probability that the BB genotype will cause the disease.