Newport iServer MicroServer iTHX-M Operator's Manual page 251

pValue Threshold
SNP Call Rate
Mendelian Error
Num Errors per
family
Select the Filters and enter threshold values.
B.
For more information about the Mendelian Error filter, see
Mendelian Error, on page
Select output file names:
6.
In this step you select the output file names and other options for
Merlin and Haploview
source software outputs
Figure 6.53
Merlin and Haploview file options
Figure 6.54
GeneHunter open source software file options
Chapter 6 | Working with Mapping Data
Specify pValue threshold for filtering SNPs.
Specify the call rate for filtering SNPs.
Select to filter SNPs with Mendelian inheritance errors
(requires use of template attributes and pedigree
information for filtered samples)
Specify number of errors for filtering SNPs.
382.
(Figure 6.53), and for GeneHunter open
(Figure 6.54).
243