Data Displayed For Mapping Arrays - Newport iServer MicroServer iTHX-M Operator's Manual

Data Displayed for Mapping Arrays

Probe Set ID
Figure 8.8
Probe Intensity Table for Mapping array
272
Affymetrix GeneChip ®
For Mapping arrays, the Probe Intensity Table displays a list of the
SNPs on the arrays, with the following information presented for each
SNP and sample (Figure
Probe Set Unique identifier for the SNP, with the following information
for each sample:
Sample Name With results for each probe cell in the probe set, arranged by
probe quartet and direction:
Sense Probe Quartet
Perfect Match Intensity Value
A (PA)
Perfect Match Intensity Value
B (PB)
MisMatch A Intensity Value
(MA)
MisMatch B Intensity Value
(MB)
Genotyping Analysis Software User's Guide
8.8):
Sample
Probe Cell
Antisense Probe Quartet
Intensity Value
Intensity Value
Intensity Value
Intensity Value