Newport iServer MicroServer iTHX-M Operator's Manual page 254

SNP STATISTICS REPORT
246
Affymetrix GeneChip ®
During export the SNP Statistics Report
a tab-delimited text file. The data can be viewed in Microsoft
Notepad, Microsoft Excel, and other text editing and spreadsheet
software.
Figure 6.56
SNP Statistics report displayed in Excel
It contains the same information for all the export types.
SNP
Chromosome
Position
HardyWeinberg
MinorAlleleFreq
Genotyping Analysis Software User's Guide
Unique identifier for the SNP.
Chromosome number for the SNP.
Chromosome position for the SNP.
Hardy-Weinberg p-value calculated for the SNP and samples
(for more information, see
page 381).
Minor allele frequency calculated for the SNP and samples
(for more information, see
(Figure 6.56) is generated as
Hardy-Weinberg Probability, on
Allele Frequency, on page 381).