Newport iServer MicroServer iTHX-M Operator's Manual page 117

MPAM Algorithm
For the Affymetrix GeneChip
performed using the Modified Partitioning Around Medoids (MPAM)
modeling algorithm. GTYPE uses the resulting cell intensity data to
determine the genotype of the SNPs represented in the sample.
The analysis results can be displayed in the MPAM mapping analysis
window (see Chapter 5, Mapping Analysis Window, on page
algorithm report is also generated and can be displayed in the Report
window (see Chapter 10, Reports, on page
It is recommended that you assign a gender to the sample when
registering the experiment and enter values for gender attributes in
GTYPE.
For more information, see
and
page 129 Determining Sample Gender, on page 328
For more information about the algorithm and the user-modifiable
settings, see Appendix B, MPAM Mapping Algorithm, on page
DM and BRLMM Algorithms
For the Affymetrix GeneChip
®
the GeneChip Human Mapping 500K Array Set, the QC analysis is
performed using the Dynamic Model (DM) mapping algorithm or the
Bayesian Robust Linear Model (BRLMM) mapping algorithm.
The analysis results can be displayed in the Dynamic Model mapping
analysis window (see
page 137). An algorithm report is also generated and can be displayed
in the Report window (see
For more information about the algorithm and the user-modifiable
settings, see Appendix C, Dynamic Model Mapping Algorithm, on
Chapter 4 | Analyzing Cell Intensity Data
®
Mapping 10K Array, an analysis is
291).
MPAM Mapping Algorithm Settings, on
®
Human Mapping 100K Array Set or
Chapter 5, Mapping Analysis Window, on
Chapter 10, Reports, on page
109
137). An
.
317.
291).