Index - Newport iServer MicroServer iTHX-M Operator's Manual

Symbols
.cel extension
391
See also cell intensity data
.chp extension 391
See also analysis results file
(*.chp)
.dat extension
391
.exp extension 391
.rpt extension
392
See also reports
A
Add Cell/Chip data items dia-
log box
120
Affymetrix technical support
algorithm
108
automatically selected for
assay type 108
Mapping 319, 337
algorithm report
107, 292
mapping 297
renaming 126
See also Report window
analysis report
292
mapping 297
See also Report window
analysis results file (*.chp)
naming in analysis 112
See also analysis results
view file information 62
analysis settings
135
Analyze dialog box
110
analyzing cell intensity data
107
using the Analyze dialog box
110
using the Batch Analysis
window 117
using the data tree 114
Assay type
13
See also
Universal Tag Arrays

Index

selecting 60
AttributeImporter Tool
GCOS Server security roles
186, 193
attributes
importing 185
in sample templates 182
selecting in AttributeImport-
er 189
B
base codes
See IUPAC base codes
Batch Analysis Options dialog
box
124
9
Batch Analysis window
renaming results 123
toolbar 119
bookmarks
creating 99
editing 100
viewing 99
C
call zone bound
call zone radius
controlling display in RAS
391
Scatter Plot 173, 174
call zone score
calculating 326
CallZoneBound
cell intensity data
analyzing
See analyzing cell inten-
sity data
file type (*.cel) 391
image settings 101
view file information 62
viewing 79
checking for sample matches
210
checking for sample mismatch-
es 219
chip averaged Mismatch score
208
185
Classic view
Color dialog box
D
data export
data file
117
data filters
data tree
328
328
defaults
147
Defaults dialog box
333
defining Virtualset Rule
deltaRAS
discrimination filter
Display tab, Mapping View Op-
tions dialog box
Distance to Radius (DTR) ratio
147, 155
documentation
59
103
for Dynamic Model Mapping
Analysis
tabular format 159
for Probe Intensity window
274
for Universal Tag analysis
tabular format 256
*.dat 391
*.txt 392
See also Filters dialog box
57
Classic view 59
controlling display of 61
Project view 59
selecting cell intensity data
for analysis 114
switching views 59
analysis settings 135
image settings 101
viewing settings 101
NetAffx User Account Infor-
mation tab 281, 285
195
247
in MPAM Mapping algo-
rithm 322
172
8
403