Mapping Analysis Workflow - Newport iServer MicroServer iTHX-M Operator's Manual

Mapping Analysis Workflow

IMPORTING ATTRIBUTES
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Affymetrix GeneChip ®
Mapping Analysis works with Mapping arrays, such as the
Affymetrix GeneChip
®
GeneChip Human Mapping 100K and 500K Sets.
®
The GTYPE Mapping Analysis workflow allows you to:
• Import attribute information
- Virtual Array Sets
- Pedigree test
- Sample Mismatch test
- SNP Export (Figure 1.24)
• Analyze the cell intensity data to generate genotype calls and
confidence scores or call zone scores
• View the analysis results
• View probe cell intensities for SNP probe sets
You can import attributes, including pedigree data, and then use the
attributes to:
• Create Virtual array sets
• Perform pedigree tests
• Perform Sample Mismatch test
• Export data for association and linkage analysis programs
Genotyping Analysis Software User's Guide
Mapping 10K Array, and Affymetrix
®
(Figure 1.10)
(Figure 1.13)
(Figure 1.17)
(Figure 1.11)
(Figure 1.15)
®
for use later in:
(Figure 1.16)