PerkinElmer LabChip GX II Manuals

Manuals and User Guides for PerkinElmer LabChip GX II. We have 1 PerkinElmer LabChip GX II manual available for free PDF download: User Manual

PerkinElmer LabChip GX II User Manual

PerkinElmer LabChip GX II User Manual (346 pages)

Brand: PerkinElmer | Category: Measuring Instruments | Size: 4.42 MB

Table of Contents

Preface

2
Instrument Safety

7
- Required Training
  7
- Chemical Safety
  8
- Laser Safety
  9
- Electrical Safety
  10
  - Power Cord Selection
    10
  - Fuses
    11
- Mechanical Safety
  11
- Table of Contents
  12
Introduction

18
- Principles of Operation
  19
- Software Modes Available
  21
Operation

22
- Opening the Labchip GX Software
  23
- Creating Desktop Shortcuts
  23
- Creating a New Assay
  24
- Running an Assay
  25
- Select the Auto Export Settings
  29
- Monitoring the Run
  30
- Stopping a Run
  31
- Continuing a Stopped Run
  32
- Saving Data Files
  33
- Saving Workspace Files
  34
- Selecting Wells Using a Sample Names File
  35
  - Using a Barcode to Specify the Sample Names File
    36
- Adding a New Plate
  38
- Placing the Barcode on the Plate
  40
- Calibrating the Optics
  41
Data Analysis

42
Using the GX Software to Analyze GX Touch Data

107
Understanding Peak Finding

108
- Data Smoothing
  108
- Peak Detection - Slope Threshold
  109
- Peak Splitting - Inflection Threshold
  112
- Peak Identification
  113
Software Security

114
- Locking and Unlocking the Software
  116
- Managing User Accounts
  117
  - Adding New Users
    118
  - Changing User Information
    119
  - Printing User Information
    120
  - Activating and Deactivating User Accounts
    120
  - Changing Access Rights
    121
  - Printing Access Rights
    122
  - Setting Policies for User Accounts
    123
  - Printing User Policies
    124
- Electronic Signatures
  125
- Automatically Exporting Copies of Data Files
  126
- Reverting to a Specific Data File Revision
  126
- Audit Trail
  127
  - Viewing the Audit Trail
    128
  - Exporting the Audit Trail
    129
- Central Data Repository (CDR)
  130
- Remote CDR Server Backup
  133
- Manually Backing up and Restoring the CFR Files
  138
  - Backing up CFR Files
    138
  - Restoring CFR Files
    140
Software Reference

142
- Labchip GX Main Window
  143
  - Menu Bar
    144
  - Chip Status and Run Status
    151
  - Error Message Area
    153
  - Plate View or Plate List
    154
  - Collection Pane
    157
  - Graph View
    158
  - Graph View Properties
    164
  - Gel View
    167
  - Gel View Properties
    170
  - Well Table View
    172
  - Peak Table View
    174
  - Peak Table Properties
    179
  - Filter View
    180
- About Labchip GX Window
  183
- Add New Expected Peak Window
  184
- Add Plate Window
  185
- Assay Analysis Window
  186
  - Assay Information Tab
    187
  - Alignment Tab
    188
  - Analysis Tab
    189
  - Peak Find Tab
    192
  - Expected Fragments/Proteins/Glycans Tab
    196
  - Excluded Peaks Tab
    198
  - Smear Analysis Tab
    200
  - Titer Tab
    202
  - Advanced Tab
    205
- Audit Trail Window
  208
- Audit Trail Export Window
  209
- Audit Trail Manage Columns Window
  210
- CDR Manager Window
  211
- CDR Server Utility Window
  213
- CDR Utility Window
  214
- Change Password Window
  216
- Data File Version Window
  217
- Event Viewer Window
  218
- Export Window
  219
- Installation Qualification Window
  222
- Layout Options Window
  223
- Login Window
  224
- New Collection Window
  225
- Optics Calibration Window
  226
- Perform Signature Window
  228
- Plate Information Window
  229
- Print Window
  230
- Print Validation Reports Window
  232
- Rename Collection Window
  233
- Robot Teaching Wizard
  234
  - Welcome Window
    235
  - Teach Robot Window
    236
  - Teach the X, y and Z Reference Positions Window
    237
  - Verify a Plate Window
    238
  - Verify Positions Window
    239
  - Finished Window
    240
  - Verify All Target Positions Window
    241
  - Verify All Target Positions Correct Window
    242
- Run File Editor Window
  243
- Run Info Window
  244
- Sample Name Editor Window
  245
- Save Workspace as Window
  247
- Select a Data File Window
  248
- Start Run Window
  249
  - Run Tab
    250
  - Output Tab
    252
  - Advanced Tab
    254
- System Diagnostics Window
  256
- Unlock Application Window
  258
- Unlock Data File Window
  259
- User Administration Window
  260
  - Create New User
    261
  - Edit Users
    263
  - Show User Info
    264
  - De/Activate User
    266
  - Define Access
    267
  - Set Policies
    269
Labchip GX Instrument Description

270
- Front View
  270
- Front Panel
  271
- Rear Connectors
  272
- Optics
  273
- Chip Pressure System
  273
- Barcode Reader
  273
- DNA, RNA, and Protein Chips
  274
- Chip Cartridge
  275
  - High Voltage Interface
    276
- Microplate Carrier
  277
- USB Key for 21 CFR Part 11 Option
  277
- Specifications
  278
  - General
    278
  - Environmental
    278
  - Electrical
    278
  - Assay Voltage
    279
  - Chip Pressure
    279
  - Chip Temperature Control
    279
  - Fluorescence Detection
    279
  - Light Source (Red Laser Diode)
    279
  - Barcode Reader
    279
Maintenance and Service

280
- Cleaning the Chip Cartridge
  281
- Cleaning the Instrument Electrodes
  281
- Cleaning Test Chip C
  282
Troubleshooting and Diagnostics

283
- Searching for Events in the Events Tab
  283
- Viewing Current Events in the Events Tab
  284
- Viewing Past Events in the Events Tab
  284
- Error Messages
  285
  - Device <Name> Is Disconnected
    286
  - Plate Carrier Motion Blocked
    286
  - Home Timeout
    286
  - Move Timeout
    287
  - Pressure Leak Detected
    287
  - Focus Failed
    287
  - Maximum Samples Exceeded
    288
  - Chip Primed for Different Assay
    288
  - HV Check Failed
    288
  - Current Leakage Check Failed
    289
  - Chip Temperature Warning
    289
- Running Installation Qualification (IQ)
  290
- Running Operational Qualification (OQ)
  290
- Diagnostics
  291
  - Running the Diagnostics Tests
    291
  - Description of Diagnostic Tests
    292
- Troubleshooting Assay Problems
  298
- Software Problems
  298
  - Cannot Save a File
    298
  - Computer Software Lock-Ups
    299
- Zipping the Log Files
  300
Tips and Shortcuts

301
Glossary of Terms

302
- Data Files
  307
Perkinelmer Product Warranty

330
Perkinelmer Software License Agreement

332
Index

336

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