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MiSeq System Guide
4
[Optional]
Select Start run after pre-run check. Do not prompt for confirmation. to start the run
automatically.
5
In the BaseSpace Settings tab, enter the address of the Cloud Server or Onsite Server location.
The Onsite Server setting is required if you use BaseSpace Onsite.
6
Select Send Instrument Performance Data to Illumina to aid technical support to enable the Illumina
Proactive monitoring service. The name of the setting in the software interface might be different from the
name in this guide, depending on the version of MCS in use.
With this setting turned on, instrument performance data are sent to Illumina. This data helps Illumina
troubleshoot more easily and detect potential failures, enabling proactive maintenance and maximizing
instrument uptime. For more information on the benefits of this service, see Illumina Proactive Technical
Note (document # 1000000052503) .
This service:
Does not send sequencing data.
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Requires that the instrument be connected to a network with internet access.
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Is turned on by default. To opt out of this service, disable the Send Instrument Performance Data to
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Illumina to aid technical support setting.
Configure Notifications of BaseSpace Updates
1
From the Home screen, select Manage Instrument.
2
Select Software Update.
3
Select Automatically check for new software updates on BaseSpace.
Set Email Preferences
MiSeq can be configured to send an email notification when RTA analysis is complete, when on-instrument
secondary analysis is complete, or if a critical MiSeq software error occurs.
1
From the Home screen, select Run Options.
2
Select the Email Notifications tab.
3
Enter the following information:
Local SMTP email server address—Use the on-screen keyboard to enter the local SMTP email server
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address. If necessary, contact the facility administrator for this information.
Sender address—Use the on-screen keyboard to enter the sender email address. This address can
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be your email address or a different address specified for sending email notifications.
Recipient addresses—Use the on-screen keyboard to enter the email addresses of each recipient to
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receive notifications. Separate each email address with a comma. Select Test to send a test email to
notification recipients.
Notify via email when—Select the checkbox for each of the run events that trigger a notification.
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Set Default Folder Locations
Folders can be on a local network or on the instrument computer.
1
From the Home screen, select Run Options.
2
Select the Folder Settings tab.
3
Enter default locations for the following folders.
Document # 15027617 v04 Material # 20024228
For Research Use Only. Not for use in diagnostic procedures.
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