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Leica SP5 II Instructions Manual

Leica SP5 II Instructions Manual

Laser scanning confocal microscope
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8/31/2020
Instructions for the Leica SP5 II laser
scanning confocal microscope
Content:
Check-in and Start up
a z-stack
Sequential scan
Check-in and Start up
1. Main Switch Board: switch on PC Microscope, log on and wait until Windows XP is fully loaded
2. Main Switch Board: switch on Scanner Power, wait 5 S
3. launch LAS AF (desktop shortcut),
select the desirable Configuration
and scanner mode, then click ok
Note: Usually, Configuration is
Machine and Activate Resonant
Scanner is unchecked. However,
if the previous user has selected
simulated SP5 or used resonant
scanner, these will become the
default when start up, therefore please check carefully before clicking OK.
4. make sure the condenser is in the "up" position, click Yes to initialize the stage when prompted
this enables Mark and Find, and Tile scan
stage is configured to return to the position before initialization
5. Main Switch Board: when the software finish loading, switch on Laser Power and turn the key clockwise to
On-1 to enable Laser Emission
6. in LAS AF, click on the Configuration Operating step on top left to bring up Hardware Configuration
Laser: check to activate lasers that will be used for the session
Note: If you need the Ar laser, set the power to 20 %. You can use higher power which will
shorten the life span of the laser; but one should never go above 80 % into the red region.
(optional) Settings > Resolution > Bit Depth: select 12 Bit for 4096 grey levels, the maximum this
system can offer
file:///E:/pang/work/web-oringinal/sp5_inst_print.shtml
Instruction for Leica SP5 confocal microscope
Set up acquistion parameters
Check out
Appendix
Optimize acquistion parameters
Acquire
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Summary of Contents for Leica SP5 II

  • Page 1 8/31/2020 Instruction for Leica SP5 confocal microscope Instructions for the Leica SP5 II laser scanning confocal microscope Content: Check-in and Start up • Set up acquistion parameters • Optimize acquistion parameters • Acquire a z-stack • Sequential scan • Check out •...
  • Page 2 1. Beam Path Settings in the central Work area: there are 3 ways to configure excitation and emission parameters A. use a preset i. click on Load/Save single setting ii. select a Leica or User Settings (for multichannels, the default is simultaneous scan, see below for sequential scan) B.
  • Page 3 8/31/2020 Instruction for Leica SP5 confocal microscope ii. select the beam splitter (dichroic) selections for different laser lines beam splitter RT 30/70 for backscatter or Substrate 488/561/633 458/514 488/561 reflection laser line (nm) ✓ ✓ ✓ ✓ ✓ ✓ ✓ ✓ ✓ ✓...
  • Page 4 8/31/2020 Instruction for Leica SP5 confocal microscope 2. select the Acquire Operating step on top left, click the Acquisition tab to set up the data format A. Acquisition mode panel defaults to xyz simultaneous scan seq. button enables sequential scan...
  • Page 5 8/31/2020 Instruction for Leica SP5 confocal microscope Z-stack Z-Stack panel focus control is selectable: z-Galvo (default) or z- Wide focus (z-Position) can be adjusted with the microscope controls, Smart Panel and also via software (see z-drives in the Appendix) z-drive controls...
  • Page 6 8/31/2020 Instruction for Leica SP5 confocal microscope Sequential scanning 1. set up a simultaneous scan for the fluorophores needed with regard to laser power, beam splitter, emission band, and PMT settings; activate one laser line and detector combination at a time to find out the optimal acquisition parameters 2.
  • Page 7 8/31/2020 Instruction for Leica SP5 confocal microscope Stage automation Caution: whenever the Tile Scan or Mark and Find window is launched i. any tiles or points marked will be processed when you click Start ii. the grey area represents the stage, a left mouse click will cause the stage to move to that specific location and can be dangerous for any objective lenses except the 10×...
  • Page 8 8/31/2020 Instruction for Leica SP5 confocal microscope relevant details for tile scan, current rotation calibration for stitching is -0.19 ° (-0.18 ° is also OK) with a 10% overlap tile scan order is row-wise in the viewer display window, starting from the lower left, which...
  • Page 9 8/31/2020 Instruction for Leica SP5 confocal microscope Check out 1. lower the turret, remove your prep; if applicable, remove oil/immersion fluid on immersion objectives 2. switch to the 10× objective 3. if there are users signed up within the next 6 hours do the following, otherwise go to the next step i.
  • Page 10 8/31/2020 Instruction for Leica SP5 confocal microscope Appendix Content DMI 6000 inverted microscope: basic controls • modes of operation • using immersion objectives beam splitter spectra • working with lif files • scanner software overview and layout LAS AF user interface...
  • Page 11 8/31/2020 Instruction for Leica SP5 confocal microscope AP: aperture diaphragm for TL INT : light intensity, press both together to toggle between Coarse and Fine mode FD: field diaphragm for IL 3. front top row switches should not be activated, or...
  • Page 12: Modes Of Operation

    8/31/2020 Instruction for Leica SP5 confocal microscope front LCD panel displays the current status 1. Contrasting method e.g., TL, FLUO, or SCAN; and IL SHUTTER status 2. Objective lens and Magnification, see front top buttons above 3. Illumination and Apertures 4.
  • Page 13 8/31/2020 Instruction for Leica SP5 confocal microscope Using immersion objective lenses 2 ways to switch from DRY to IMM objectives semi-auto with Mark and Find (recommended) 1. locate the area of interest with a dry objective and focus 2. click to bring up the Mark and Find interface 3.
  • Page 14 8/31/2020 Instruction for Leica SP5 confocal microscope more on immersion objective lenses objective with correction collar (the upper knurled ring with a black dot) 20×/0.7 NA multi immersion objective, currently set to use oil only 63×/1.2 NA water immersion objective, set at 0.17 OIL: oil, with or without coverglass T+ ←: turn to this direction for higher...
  • Page 15 8/31/2020 Instruction for Leica SP5 confocal microscope Smart Panel (coming soon) beam splitter spectra RT 30/70 is 30% reflection and 70% transmission Substrate is just plain glass (50/50) RSP 500 is a 500 nm long pass filter TD and DD are triple and double dichroics (transmission bands in blue)
  • Page 16 8/31/2020 Instruction for Leica SP5 confocal microscope software control of the z-drive This provides alternate means to control the z-Position only when the Smart Panel is unavailable enter a number directly into the text boxes of z-Position, Begin, or End...