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Supermicro SuperServer SYS-5039MP-H8TNR User Manual

Supermicro SuperServer SYS-5039MP-H8TNR User Manual

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SuperServer
®
SYS-5039MP-H8TNR
USER'S MANUAL
Revision 1.0a

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Summary of Contents for Supermicro SuperServer SYS-5039MP-H8TNR

  • Page 1 SuperServer ® SYS-5039MP-H8TNR USER’S MANUAL Revision 1.0a...
  • Page 2 State of California, USA. The State of California, County of Santa Clara shall be the exclusive venue for the resolution of any such disputes. Supermicro's total liability for all claims will not exceed the price paid for the hardware product.

  • Page 3: About This Manual

    If you have any questions, please contact our support team at: support@supermicro.com This manual may be periodically updated without notice. Please check the Supermicro website for possible updates to the manual revision level. Warnings Special attention should be given to the following symbols used in this manual.

  • Page 4: Table Of Contents

    SuperServer SYS-5039MP-H8TNR User's Manual Contents Chapter 1 Introduction 1.1 Overview ..........................8 1.2 Unpacking the System ......................8 1.3 System Features .........................9 1.4 Chassis Features .......................10 Control Panel ........................10 Chassis Front ........................11 Chassis Rear ........................12 Connecting to a Node ....................13 1.5 Motherboard Layout ......................14 Quick Reference Table ......................15...
  • Page 5 Preface Chapter 3 Maintenance and Component Installation 3.1 Removing Power ........................27 3.2 Accessing the System ......................28 Removing a Computing Node ..................28 Removing the Chassis Cover ...................29 3.3 Motherboard Components ....................30 Memory ..........................30 Memory Support ......................30 DIMM Module Population Configuration ................30 Memory Population Guidelines ..................31 Memory Population Sequence ..................32 Installing Memory ......................33...
  • Page 6 SuperServer SYS-5039MP-H8TNR User's Manual Chapter 5 Software 5.1 Microsoft Windows OS Installation ..................56 5.2 Driver Installation ........................58 5.3 SuperDoctor 5 ........................59 ® 5.4 IPMI ............................60 Chapter 6 UEFI BIOS 6.1 Introduction .........................61 Starting the Setup Utility ....................61 6.2 Main Setup .........................62 6.3 Advanced ..........................64...

  • Page 7: Contacting Supermicro

    San Jose, CA 95131 U.S.A. Tel: +1 (408) 503-8000 Fax: +1 (408) 503-8008 Email: marketing@supermicro.com (General Information) Sales-USA@supermicro.com (Sales Inquiries) Government_Sales-USA@supermicro.com (Gov. Sales Inquiries) support@supermicro.com (Technical Support) RMA@supermicro.com (RMA Support) Webmaster@supermicro.com (Webmaster) Website: www.supermicro.com Europe Address: Super Micro Computer B.V.

  • Page 8: Overview

    SuperServer SYS-5039MP-H8TNR User's Manual Chapter 1 Introduction 1.1 Overview This chapter provides a brief outline of the functions and features of the SYS-5039MP-H8TNR server. It is a 3U Micro-cloud system with eight computing nodes, each with an X11SPD-F motherboard, all enclosed in the CSE-938NH-R2K20B chassis.

  • Page 9: System Features

    Chapter 1: Introduction 1.3 System Features The following table is an overview of the main features of the SYS-5039MP-H8TNR server. System Features Node Eight high-density, hot-pluggable nodes Motherboard (per node) X11SPD-F 4.75" x 15.689" (120.65 mm x 398.50 mm) CPU (per node) Single Intel®...

  • Page 10: Chassis Features

    SuperServer SYS-5039MP-H8TNR User's Manual 1.4 Chassis Features Control Panel Power switches and status LEDs are located on the control panel on the front of the chassis. Figure 1-1. Control Panel Control Panel Features Item Features Description The main power switch applies or removes primary power from the power supply to Power button the chassis but maintains standby power.

  • Page 11: Chassis Front

    Chapter 1: Introduction Chassis Front The illustration below shows the features included on the front of the chassis. Figure 1-2. Front View Chassis Front Features Item Features Description Control Panel Power buttons and status indicators; details on the previous page Sixteen 3.5"...

  • Page 12: Chassis Rear

    SuperServer SYS-5039MP-H8TNR User's Manual Chassis Rear The illustration below shows the features included on the rear of the chassis. Computing nodes and power supply modules display status lights. Figure 1-3. Rear View Chassis Rear Features Item Features Description Each node features a power button, two LAN ports, one dedicated IPMI LAN port, 1 –...

  • Page 13: Connecting To A Node

    Chapter 1: Introduction Figure 1-4. Node I/O Features Connecting to a Node USB, COM, and VGA port capabilities can be added to any node through the KVM port on the rear. Plug in the adapter (dongle). Figure 1-5. Adapter to Provide USB, COM, and VGA Ports...

  • Page 14: Motherboard Layout

    SuperServer SYS-5039MP-H8TNR User's Manual 1.5 Motherboard Layout Below is a layout of the X11SPD-F motherboard with jumper, connector and LED locations shown. See the table on the following page for descriptions. For detailed descriptions, pinout information and jumper settings, refer to Chapter 4.

  • Page 15: Quick Reference Table

    Chapter 1: Introduction Quick Reference Table Jumper Description Default Setting JBT1 CMOS Clear Open (Normal) JPME2 Manufacturing Mode Pins 1-2 (Normal) JWD1 Watch Dog Timer Pins 1-2 (Normal) Connector Description Onboard CMOS battery socket CPU microLP PCI-E 3.0 x8 Onboard PCH sSATA or SAS add-on card JPCIE1 CPU Slot1 PCI-E 3.0 x16 JCPLD1...

  • Page 16: System Block Diagram

    SuperServer SYS-5039MP-H8TNR User's Manual System Block Diagram PCIe3.0 x 16 PCIe x 16 SLOT DDR 4 DIMMA A Intel 2933/2666/2400/2133MHz PCIe3.0 x 8 DIMMA B (FAR) PCIe x8 MLP SLOT Xeon DDR 4 DIMMA D PCIe3.0 x 4 DIMMA E (FAR)

  • Page 17: Where To Get Replacement Components

    (http://www.supermicro.com/ support/rma/). Whenever possible, repack the chassis in the original Supermicro carton, using the original packaging material. If these are no longer available, be sure to pack the chassis securely, using packaging material to surround the chassis so that it does not shift within the carton and become damaged during shipping.

  • Page 18: Chapter 2 Server Installation

    SuperServer SYS-5039MP-H8TNR User's Manual Chapter 2 Server Installation 2.1 Overview This chapter provides advice and instructions for mounting your system in a server rack. If your system is not already fully integrated with processors, system memory etc., refer to Chapter 3 for details on installing those specific components.

  • Page 19: Server Precautions

    Chapter 2: Server Installation • In single rack installations, stabilizers should be attached to the rack. In multiple rack in- stallations, the racks should be coupled together. • Always make sure the rack is stable before extending a server or other component from the rack.

  • Page 20: Circuit Overloading

    SuperServer SYS-5039MP-H8TNR User's Manual Circuit Overloading Consideration should be given to the connection of the equipment to the power supply circuitry and the effect that any possible overloading of circuits might have on overcurrent protection and power supply wiring. Appropriate consideration of equipment nameplate ratings should be used when addressing this concern.

  • Page 21: Installing The Rails

    Chapter 2: Server Installation 2.3 Installing the Rails There are a variety of rack units on the market, which may require a slightly different assembly procedure. This rail set fits a rack between 26.8" and 36.4" deep. The following is a basic guideline for installing the system into a rack with the rack mounting hardware provided.

  • Page 22: Releasing The Inner Rail

    SuperServer SYS-5039MP-H8TNR User's Manual Releasing the Inner Rail Each inner rail has a locking latch. This latch prevents the server from coming completely out of the rack when the chassis is pulled out for servicing. To mount the rail onto the chassis, first release the inner rail from the outer rails.

  • Page 23: Installing The Inner Rails On The Chassis

    Chapter 2: Server Installation Installing the Inner Rails on the Chassis Installing the Inner Rails 1. Identify the left and right inner rails. They are labeled. 2. Place the inner rail firmly against the side of the chassis, aligning the hooks on the side of the chassis with the holes in the inner rail.

  • Page 24: Installing The Outer Rails Onto The Rack

    SuperServer SYS-5039MP-H8TNR User's Manual Installing the Outer Rails onto the Rack Each end of the assembled outer rail includes a bracket with hooks and square, spring-loaded pegs to fit into the square holes in your rack. Installing the Outer Rail 1.

  • Page 25: Installing The Chassis Into A Rack

    Chapter 2: Server Installation 2.4 Installing the Chassis into a Rack Once rails are attached to the chassis and the rack, you can install the server. Warning: Mounting the system into the rack requires at least two people to support the chassis during installation.

  • Page 26: Removing The Chassis From The Rack

    SuperServer SYS-5039MP-H8TNR User's Manual Removing the Chassis from the Rack Caution! The system is heavy. It is dangerous for a single person to remove it from the rack. Have sufficient personnel or use a lift to support the chassis. 1. Pull the chassis forward out the front of the rack until it stops.

  • Page 27: Chapter 3 Maintenance And Component Installation

    Chapter 3: Maintenance and Component Installation Chapter 3 Maintenance and Component Installation This chapter provides instructions on installing and replacing main system components. To prevent compatibility issues, only use components that match the specifications and/or part numbers given. Installation or replacement of most components require that power first be removed from the system.

  • Page 28: Accessing The System

    SuperServer SYS-5039MP-H8TNR User's Manual 3.2 Accessing the System The chassis contains eight computing nodes, each removable from the rear of the chassis while the others continue operating. Removing a Computing Node The two storage drives controlled by the node will power down upon removal.

  • Page 29: Removing The Chassis Cover

    Chapter 3: Maintenance and Component Installation Removing the Chassis Cover You can access some chassis components, such as fans, by removing the cover. Screws Figure 3-2. Removing the Chassis Cover Removing the Chassis Cover The chassis top cover can be lifted off after removing three screws. Caution: Except for short periods of time, do not operate the server without the cover in place.

  • Page 30: Motherboard Components

    Memory Memory Support The X11SPD-F motherboard supports up to 512GB of ECC 3DS LRDIMM in four DIMM slots with speed of up to 2933MHz. Check the Supermicro website for possible updates to memory support. DIMM Module Population Configuration For optimal memory performance, follow the table below when populating memory.

  • Page 31: Memory Population Guidelines

    • Using unbalanced memory topology, such as populating two DIMMs in one channel while populating one DIMM in another channel, reduces performance. It is not recommended for Supermicro systems. Guidelines Regarding Mixing DIMMs • Populating slots with a pair of DIMM modules of the same type and size results in inter- leaved memory, which improves memory performance.

  • Page 32: Memory Population Sequence

    SuperServer SYS-5039MP-H8TNR User's Manual Memory Population Sequence When installing memory modules, the DIMM slots should be populated in the following order: DIMMA1, DIMMD1, DIMMB1, DIMME1. Blue slots versus black slots: Install the first DIMM in the blue memory slot, which is the first of a memory channel.

  • Page 33: Installing Memory

    Chapter 3: Maintenance and Component Installation Installing Memory ESD Precautions Electrostatic Discharge (ESD) can damage electronic com ponents including memory modules. To avoid damaging DIMM modules, it is important to handle them carefully. The following measures are generally sufficient. • Use a grounded wrist strap designed to prevent static discharge.

  • Page 34: Motherboard Battery

    SuperServer SYS-5039MP-H8TNR User's Manual Motherboard Battery The motherboard uses non-volatile memory to retain system information when system power is removed. This memory is powered by a lithium battery residing on the motherboard. Replacing the Battery Begin by removing power from the system as described in section 3.1.

  • Page 35: Chassis Components

    Chapter 3: Maintenance and Component Installation 3.4 Chassis Components This section provides instructions on installing and replacing system components. To assure compatibility, only use components that match the specifications or part numbers given. Corresponding Nodes, Fans and Hard Drives The CSE-938NH-R2K20B chassis contains eight individual nodes each containing a motherboard.

  • Page 36: Storage Drives

    Blinking at 1 Hz Attention state—do not remove NVMe device (not supported in VMD mode) Note: Enterprise level hard disk drives are recommended for use in Supermicro chassis and servers. For information on recommended HDDs, visit the Supermicro website at https://www.
  • Page 37 Chapter 3: Maintenance and Component Installation Removing a Hot-Swap Drive Carrier from the Chassis 1. Press the release button on the drive carrier, which will extend the drive carrier handle. 2. Use the drive carrier handle to pull the drive out of the chassis. Figure 3-6.

  • Page 38: Installing A Drive

    SuperServer SYS-5039MP-H8TNR User's Manual Installing a Drive 1. Remove the dummy drive, which comes pre-installed in the drive carrier, by removing the screws securing the dummy drive to the carrier. These screws are not used to mount the actual drive.

  • Page 39: Hot-Swap For Nvme Drives

    Chapter 3: Maintenance and Component Installation Hot-Swap for NVMe Drives Supermicro servers support NVMe surprise hot-swap. For even better data security, NVMe orderly hot-swap is recommended. NVMe drives can be ejected and replaced remotely using IPMI. Note: If you are using VROC, see the VROC appendix in this manual instead.

  • Page 40: Checking The Temperature Of An Nvme Drive

    SuperServer SYS-5039MP-H8TNR User's Manual Checking the Temperature of an NVMe Drive There are two ways to check using IPMI. Checking a Drive • IPMI > Server Health > NVMe SSD – Shows the temperatures of all NVMe drives, as in Figure 3-8.

  • Page 41: Solid State Drives

    Chapter 3: Maintenance and Component Installation M.2 Solid State Drives Up to two M.2 solid state drives (SSDs) can be installed in socket JMD1 and JMD2 (see Section 1.5). • M.2 Interface: 2 PCI-E 3.0 x4 • M.2 Form Factor: 2280 •...

  • Page 42: System Cooling

    2. Squeeze both release tabs on the top of the fan module and pull it out. 3. Replace the failed fan with an identical fan, available from Supermicro. Push the new fan into the housing, making sure the air flow direction is the same.

  • Page 43: Installing The Air Shroud

    Chapter 3: Maintenance and Component Installation Installing the Air Shroud Air shrouds and air blocks concentrate airflow to maximize fan efficiency. The air block is pre-installed and may be uninstalled by removing the two screws. Installing the Air Shroud 1. Power down the node and remove it. If an expansion card is used, install it first. 2.

  • Page 44: Power Supply

    The system features redundant power supplies. The system will continue to operate if one module fails. It should be replaced as soon as convenient. They can be changed without powering down the system. New units can be ordered directly from Supermicro or authorized distributors.
  • Page 45 Chapter 3: Maintenance and Component Installation Release Tab Figure 3-12. Replacing the Power Supply Changing the Power Supply Module 1. Unplug the AC cord from the module to be replaced. 2. On the back of the module, push the release tab, and pull the module out using the handle.

  • Page 46: Pci Expansion Cards

    SuperServer SYS-5039MP-H8TNR User's Manual PCI Expansion Cards The system supports one low-profile PCI-E card in each of the eight nodes with the included riser cards (RSC-RR1U-E16). Installing an Expansion Card 1. Power down the node and remove it. 2. Remove the two screws that secure the PCI bracket to the motherboard tray.
  • Page 47 Chapter 3: Maintenance and Component Installation 5. Insert the expansion card into the riser card, which is pre-installed on the motherboard (if desired, the riser card may be removed from the motherboard by removing the riser card screw). 6. Slide the add-on card bracket into the PCI card slot and fit it with the opening in the rear of the node.

  • Page 48: Chapter 4 Motherboard Connections

    SuperServer SYS-5039MP-H8TNR User's Manual Chapter 4 Motherboard Connections This section describes the connections on the motherboard and provides pinout definitions. Note that depending on how the system is configured, not all connections are required. The LEDs on the motherboard are also described here. A motherboard layout indicating component locations may be found in Chapter 1.
  • Page 49 It allows the motherboard to deny access if the TPM associated with the hard drive is not installed in the system. Go to the following link for more information on the TPM: http://www.supermicro.com/manuals/other/TPM.pdf. Trusted Platform Module Header Pin Definitions...

  • Page 50: Sas Ports

    SuperServer SYS-5039MP-H8TNR User's Manual 4-pin BMC External I C Header A System Management Bus header for IPMI 2.0 is located at JIPMB1. Connect a cable to this header to use the IPMB I C connection on your system. See the table below for pin definitions.

  • Page 51: Input/Output Ports

    Chapter 4: Motherboard Connections 4.3 Input/Output Ports Rear I/O Ports The rear of each node offers two 1Gb Ethernet ports, control switches, and a KVM port. Figure 4-1. Rear I/O Ports Description KVM Connector Power Switch UID Switch Figure 4-2. Adapter to Provide USB, COM, and VGA Ports KVM port With a KVM dongle, each node offers two USB 2.0 ports, one VGA port, and one COM port.

  • Page 52: Jumpers

    SuperServer SYS-5039MP-H8TNR User's Manual 4.4 Jumpers Explanation of Jumpers To modify the operation of the motherboard, jumpers are used to choose between optional settings. Jumpers create shorts between two pins to change the function associated with it. Pin 1 is identified with a square solder pad on the printed circuit board. See the motherboard layout page for jumper locations.
  • Page 53 Chapter 4: Motherboard Connections Watch Dog JWD1 controls the Watch Dog function. Watch Dog is a monitor that can reboot the system when a software application hangs. Jumping pins 1-2 will cause the Watch Dog to reset the system if an application hangs. Jumping pins 2-3 will generate a non-maskable interrupt signal for the application that hangs.

  • Page 54: Led Indicators

    SuperServer SYS-5039MP-H8TNR User's Manual 4.5 LED Indicators Onboard Power LED The onboard power LED is located at LEDPWR on the motherboard. When this LED is on, the system is on. Be sure to turn off the system and unplug the power cord before removing or installing components.
  • Page 55 Note: UID can also be triggered via IPMI on the motherboard. For more information on IPMI, please refer to the IPMI User's Guide posted on our website at http://www. supermicro.com/support/manuals/. UID LED Pin Definitions Color...

  • Page 56: Chapter 5 Software

    1. Create a method to access the MS Windows installation ISO file. This could be a USB flash or media drive. 2. Retrieve the proper RST/RSTe driver. Go to the Supermicro web page for your motherboard and click on "Download the Latest Drivers and Utilities", select the proper driver, and copy it to a USB flash drive.
  • Page 57 Chapter 5: Software 4. During Windows Setup, continue to the dialog where you select the drives on which to install Windows. If the disk you want to use is not listed, click on “Load driver” link at the bottom left corner. Figure 5-2.

  • Page 58: Driver Installation

    The Supermicro website contains drivers and utilities for your system at https://www. supermicro.com/wftp/driver. Some of these must be installed, such as the chipset driver. After accessing the website, go into the CDR_Images (in the parent directory of the above link) and locate the ISO file for your motherboard. Download this file to to a USB flash drive or a DVD.

  • Page 59: Superdoctor ® 5

    5.3 SuperDoctor ® The Supermicro SuperDoctor 5 is a program that functions in a command-line or web-based interface for Windows and Linux operating systems. The program monitors such system health information as CPU temperature, system voltages, system power consumption, fan speed, and provides alerts via email or Simple Network Management Protocol (SNMP).

  • Page 60: Ipmi

    SuperServer SYS-5039MP-H8TNR User's Manual 5.4 IPMI The X11SPD-F supports the Intelligent Platform Management Interface (IPMI). IPMI is used to provide remote access, monitoring and management. There are several BIOS settings that are related to IPMI. IPMI management capabilities for all nodes are supported when one of two dedicated IPMI LAN ports are connected (Figure 1-3).

  • Page 61: Chapter 6 Uefi Bios

    Chapter 6: UEFI BIOS Chapter 6 UEFI BIOS 6.1 Introduction This chapter describes the AMIBIOS™ Setup utility for the X11SPD-F motherboard. The BIOS is stored on a chip and can be easily upgraded using a flash program. Note: Due to periodic changes to the BIOS, some settings may have been added or deleted and might not yet be recorded in this manual.

  • Page 62: Main Setup

    SuperServer SYS-5039MP-H8TNR User's Manual 6.2 Main Setup When you first enter the AMI BIOS setup utility, you will enter the Main setup screen. You can always return to the Main setup screen by selecting the Main tab on the top of the screen.
  • Page 63 Chapter 6: UEFI BIOS Memory Information Total Memory This feature displays the total size of memory available in the system.

  • Page 64: Advanced

    SuperServer SYS-5039MP-H8TNR User's Manual 6.3 Advanced Use this menu to configure advanced settings. Warning: Take caution when changing the Advanced settings. An incorrect value, a very high DRAM frequency or an incorrect BIOS timing setting may cause the system to malfunction.
  • Page 65 Chapter 6: UEFI BIOS Wait For "F1" If Error This feature forces the system to wait until the F1 key is pressed if an error occurs. The options are Disabled and Enabled. IN1T9 Trap Response Interrupt 19 is the software interrupt that handles the boot disk function. When this feature is set to Immediate, the ROM BIOS of the host adaptors will "capture"...

  • Page 66: Cpu Configuration

    SuperServer SYS-5039MP-H8TNR User's Manual CPU Configuration  The following CPU information will display: • Processor BSP Revision • Processor Socket • Processor ID • Processor Frequency • Processor Max Ratio • Processor Min Ratio • Microcode Revision • L1 Cache RAM •...
  • Page 67 Chapter 6: UEFI BIOS Intel Virtualization Technology Use this feature to enable the Vanderpool Technology. This technology allows the system to run several operating systems simultaneously. The options are Disable and Enable. PPIN Control Select Unlock/Enable to use the Protected-Processor Inventory Number (PPIN) in the system. The options are Lock/Disable and Unlock/Enable.

  • Page 68: Advanced Power Management Configuration

    SuperServer SYS-5039MP-H8TNR User's Manual Advanced Power Management Configuration Power Technology Select Energy Efficient to support power-saving mode. Select Custom to customize system power settings. Select Disabled to disable power-saving settings. The options are Disable, Energy Efficient, and Custom. Power Performance Tuning When enabled, this item selects whether the BIOS or Operating System can change the energy performance bias tuning.
  • Page 69 Chapter 6: UEFI BIOS Turbo Mode This feature will enable dynamic control of the processor, allowing it to run above stock frequency. The options are Disable and Enable. Hardware PM State Control  Hardware P-States This setting allows the user to select between OS and hardware-controlled P-states. Selecting Native Mode allows the OS to choose a P-state.

  • Page 70: Chipset Configuration

    SuperServer SYS-5039MP-H8TNR User's Manual CPU T State Control Software Controlled T-States Use this feature to enable Software Controlled T-States. The options are Enable and Disable. Chipset Configuration  Warning: Setting wrong values in the below sections may cause the system to malfunction.
  • Page 71 Chapter 6: UEFI BIOS Link L1 Enable Select Enable for the QPI to enter the L1 state for power saving. The options are Dis- able, Enable, and Auto. IO Directory Cache (IODC) IO Directory Cache is an 8-entry cache that stores the directory state of remote IIO writes and memory lookups, and saves directory updates.

  • Page 72: Memory Configuration

    SuperServer SYS-5039MP-H8TNR User's Manual LLC Dead Line Alloc Select Enable to optimally fill dead lines in LLC. Select Disable to never fill dead lines in LLC. The options are Disable, Enable, and Auto. Isoc Mode Isochronous (Isoc) mode allows time-sensitive processes to be given priority. The options are Disable, Enable, and Auto.

  • Page 73: Memory Topology

    Chapter 6: UEFI BIOS IMC Interleaving This feature allows the user to configure Integrated Memory Controller (IMC) Interleaving settings. The options are Auto, 1-way Interleave, and 2-way Interleave. Memory Topology  This item displays the information of onboard memory modules as detected by the BIOS.

  • Page 74: Iio Configuration

    SuperServer SYS-5039MP-H8TNR User's Manual Patrol Scrub Patrol Scrub is a process that allows the CPU to correct correctable memory errors detected on a memory module and send the correction to the requestor (the original source). When this item is set to Enable, the IO hub will read and write back one cache line every 16K cycles if there is no delay caused by internal processing.

  • Page 75: Ioat Configuration

    Chapter 6: UEFI BIOS PCI-E Port Max Payload Size Selecting Auto for this feature will enable the motherboard to automatically detect the maximum Transaction Layer Packet (TLP) size for the connected PCI-E device, allowing for maximum I/O efficiency. Selecting 128B or 256B will designate maximum packet size of 128 or 256.
  • Page 76 SuperServer SYS-5039MP-H8TNR User's Manual PassThrough DMA Use this feature to allow devices such as network cards to access the system memory without using a processor. Select Enable to use the Non-Isoch VT_D Engine Pass Through Direct Memory Access (DMA) support. The options are Enable and Disable.
  • Page 77 Chapter 6: UEFI BIOS Hot Plug Capable (Available when the device is detected by the system) Use this feature to enable hot plug support for PCIe root ports 1A~1D. The options are Disable and Enable. VMD Config for PStack1 Intel® VMD for Volume Management Device for PStack1 Select Enable to use the Intel Volume Management Device Technology for this stack.

  • Page 78: South Bridge

    SuperServer SYS-5039MP-H8TNR User's Manual PCI-E Completion Timeout Disable Use this feature to enable PCI-E Completion Timeout support for electric tuning. The options are Yes, No, and Per-Port. South Bridge  The following USB information will display: • USB Module Version •...

  • Page 79: Pch Sata Configuration

    Chapter 6: UEFI BIOS PCH SATA Configuration  When this submenu is selected, the AMI BIOS automatically detects the presence of the SATA devices that are supported by the Intel PCH chipset and displays the following items: SATA Controller Use this feature to enable or disable the onboard SATA controller supported by the Intel PCH chipset.

  • Page 80: Pch Ssata Configuration

    SuperServer SYS-5039MP-H8TNR User's Manual Spin Up Device On an edge detect from 0 to 1, set this item to allow the PCH to initialize the device. The options are Disable and Enable. SATA Device Type Use this feature to specify if the SATA port specified by the user should be connected to a Solid State drive or a Hard Disk Drive.

  • Page 81: Pcie/Pci/Pnp Configuration

    Chapter 6: UEFI BIOS sSATA Port 1 and 5 This item displays the information detected on the installed SATA drive on the particular SATA port. Hot Plug Set this feature to Enable for hot plug support, which will allow the user to replace a SATA drive without shutting down the system.
  • Page 82 SuperServer SYS-5039MP-H8TNR User's Manual MMCFG Base Use this feature to select the low base address for PCI-E adapters to increase base memory. The options are 1G, 1.5G, 1.75G, 2G, 2.25G, and 3G. NVMe Firmware Source Use this feature to select the NVMe firmware to support booting. The options are Vendor Defined Firmware and AMI Native Support.

  • Page 83: Network Stack Configuration

    Chapter 6: UEFI BIOS Onboard LAN2 Option ROM Use this feature to select which firmware function to be loaded for LAN Port2 used for system boot. The options are Disabled, Legacy, and EFI. Onboard NVMe1 Option ROM Use this feature to select which firmware function to be loaded for onboard NVMe1. The options are Disabled, Legacy, and EFI.

  • Page 84: Super Io Configuration

    SuperServer SYS-5039MP-H8TNR User's Manual Media detect count Use this option to specify the number of times media will be checked. Press "+" or "-" on your keyboard to change the value. The default setting is 1. Super IO Configuration ...

  • Page 85: Serial Port Console Redirection

    Chapter 6: UEFI BIOS Serial Port Console Redirection  COM1 Console Redirection Select Enabled to enable COM1 for Console Redirection, which will allow a client machine to be connected to a host machine at a remote site for networking. The options are Disabled and Enabled.
  • Page 86 SuperServer SYS-5039MP-H8TNR User's Manual Stop Bits A stop bit indicates the end of a serial data packet. Select 1 Stop Bit for standard serial data communication. Select 2 Stop Bits if slower devices are used. The options are 1 and 2.
  • Page 87 Chapter 6: UEFI BIOS *If the feature above is set to Enabled, the following features will become available for configuration: Console Redirection Settings  Console Redirection Settings Terminal Type This feature allows the user to select the target terminal emulation type for Console Redirection.
  • Page 88 SuperServer SYS-5039MP-H8TNR User's Manual VT-UTF8 Combo Key Support Select Enabled to enable VT-UTF8 Combination Key support for ANSI/VT100 terminals. The options are Disabled and Enabled. Recorder Mode Select Enabled to capture the data displayed on a terminal and send it as text messages to a remote server.

  • Page 89: Acpi Settings

    Chapter 6: UEFI BIOS Select Enabled to use a COM port selected by the user for EMS Console Redirection. The options are Disabled and Enabled. *If the feature above is set to Enabled, the following features are available for configuration: Console Redirection Settings ...

  • Page 90: Trusted Computing

    SuperServer SYS-5039MP-H8TNR User's Manual This feature Enables the Windows Hardware Error Architecture (WHEA) support for the Windows 2008 (or a later version) operating system. The options are Disabled and Enabled. High Precision Event Timer Select Enabled to activate the High Performance Event Timer (HPET) that produces periodic...
  • Page 91 Use this feature to disable or enable Platform Hierarchy (PH) Randomization. The options are Disabled and Enabled. SMCI BIOS-Based TPM Provision Support Use this feature to enable the Supermicro TPM Provision support. The options are Disabled and Enabled. TXT Support Intel Trusted Execution Technology (TXT) helps protect against software-based attacks and ensures protection, confidentiality, and integrity of data stored or created on the system.

  • Page 92: Iscsi Configuration

    SuperServer SYS-5039MP-H8TNR User's Manual TLS Authenticate Configuration  This submenu allows the user to configure Transport Layer Security (TLS) settings.  Server CA Configuration  Enroll Certification Enroll Cert Using File Use this feature to enroll certification from a file.

  • Page 93: Event Logs

    Chapter 6: UEFI BIOS 6.4 Event Logs Use this menu to configure event log settings. Change SMBIOS Event Log Settings Enabling/Disabling Options SMBIOS Event Log Change this feature to enable or disable all features of the SMBIOS Event Logging during system boot.

  • Page 94: View Smbios Event Log

    SuperServer SYS-5039MP-H8TNR User's Manual Smbios Event Log Standard Settings Log System Boot Event Select Enabled to log system boot events. The options are Enabled and Disabled. MECI (Multiple Event Count Increment) Enter the increment value for the multiple event counter. Enter a number between 1 to 255.

  • Page 95: Ipmi

    Chapter 6: UEFI BIOS 6.5 IPMI Use this menu to configure Intelligent Platform Management Interface (IPMI) settings. BMC Firmware Revision This feature indicates the BMC firmware revision in your system. IPMI Status This feature indicates the status of the IPMI on your system. System Event Log Enabling/Disabling Options SEL Components...

  • Page 96: Bmc Network Configuration

    SuperServer SYS-5039MP-H8TNR User's Manual When SEL is Full This feature allows the user to decide what the BIOS should do when the system event log is full. Select Erase Immediately to erase all events in the log when the system event log is full.
  • Page 97 Chapter 6: UEFI BIOS Subnet Mask This item displays the sub-network that this computer belongs to. The value of each three- digit number separated by dots should not exceed 255. Station MAC Address This item displays the Station MAC address for this computer. Mac addresses are 6 two-digit hexadecimal numbers.

  • Page 98: Security

    SuperServer SYS-5039MP-H8TNR User's Manual 6.6 Security Use this menu to configure the security settings for the system. Administrator Password Use this feature to set the administrator password which is required to enter the BIOS setup utility. The length of the password should be from 3 to 20 characters long.
  • Page 99 Chapter 6: UEFI BIOS Secure Boot Select Enable for secure boot support to ensure system security at boot up. The options are Disabled and Enabled. Secure Boot Mode This feature allows the user to select the desired secure boot mode for the system. The options are Standard and Custom.
  • Page 100 SuperServer SYS-5039MP-H8TNR User's Manual Secure Boot variable  Platform Key (PK) Update Select Yes to load the new Platform Keys (PK) from the manufacturer's defaults. Select No to load the Platform Keys from a file. The options are Yes and No.
  • Page 101 Chapter 6: UEFI BIOS  OsRecovery Signatures Update Select Yes to load a factory default dbr or No to load from a file on an external media. Append Select Yes to add the dbr from the manufacturer's defaults list to the existing dbr. Select No to load the dbr from a file.

  • Page 102: Boot

    SuperServer SYS-5039MP-H8TNR User's Manual 6.7 Boot Use this menu to configure boot settings. Boot Mode Select Use this feature to select the type of device that the system is going to boot from. The options are Legacy, UEFI, and DUAL.
  • Page 103 Chapter 6: UEFI BIOS • Boot Order #7 • Boot Order #8 • Boot Order #9 • Boot Order #10 • Boot Order #11 • Boot Order #12 • Boot Order #13 • Boot Order #14 • Boot Order #15 •...

  • Page 104: Save & Exit

    SuperServer SYS-5039MP-H8TNR User's Manual 6.8 Save & Exit Use this menu to configure save and exit settings. Save Options Discard Changes and Exit Select this feature to quit the BIOS Setup without making any permanent changes to the system configuration and reboot the computer. Select Discard Changes and Exit from the Exit menu and press <Enter>.
  • Page 105 Chapter 6: UEFI BIOS Default Options Restore Optimized Defaults To set this feature, select Restore Optimized Defaults and press <Enter>. These are factory settings designed for maximum system performance but not for maximum stability. Save as User Defaults To set this feature, select Save as User Defaults from the Exit menu and press <Enter>. This enables the user to save any changes to the BIOS setup for future use.

  • Page 106: Appendix A Bios Error Codes

    When BIOS performs the Power On Self Test, it writes checkpoint codes to I/O port 0080h. If the computer cannot complete the boot process, a diagnostic card can be attached to the computer to read I/O port 0080h (Supermicro p/n AOC-LPC80-20). For information on AMI updates, please refer to http://www.ami.com/products/.

  • Page 107: Appendix B Standardized Warning Statements For Ac Systems

    Supermicro's Technical Support department for assistance. Only certified technicians should attempt to install or configure components. Read this appendix in its entirety before installing or configuring components in the Supermicro chassis. These warnings may also be found on our website at http://www.supermicro.com/about/...
  • Page 108 Appendix B: System Specifications Warnung WICHTIGE SICHERHEITSHINWEISE Dieses Warnsymbol bedeutet Gefahr. Sie befinden sich in einer Situation, die zu Verletzungen führen kann. Machen Sie sich vor der Arbeit mit Geräten mit den Gefahren elektrischer Schaltungen und den üblichen Verfahren zur Vorbeugung vor Unfällen vertraut. Suchen Sie mit der am Ende jeder Warnung angegebenen Anweisungsnummer nach der jeweiligen Übersetzung in den übersetzten Sicherheitshinweisen, die zusammen mit diesem Gerät ausgeliefert wurden.

  • Page 109: Installation Instructions

    SuperServer SYS-5039MP-H8TNR User's Manual . ٌ ‫ا ك ً ف حالة و ٌ يك أى تتسبب ف اصابة جسذ ة ٌ هذا الزهز ع ٌ خطز !تحذ ز‬ ‫قبل أى تعول عىل أي هعذات،يك عىل علن بالوخاطز ال ا ٌجوة عي الذوائز‬...

  • Page 110: Circuit Breaker

    Appendix B: System Specifications Warnung Vor dem Anschließen des Systems an die Stromquelle die Installationsanweisungen lesen. ¡Advertencia! Lea las instrucciones de instalación antes de conectar el sistema a la red de alimentación. Attention Avant de brancher le système sur la source d'alimentation, consulter les directives d'installation. .‫יש...
  • Page 111 SuperServer SYS-5039MP-H8TNR User's Manual Warnung Dieses Produkt ist darauf angewiesen, dass im Gebäude ein Kurzschluss- bzw. Überstromschutz installiert ist. Stellen Sie sicher, dass der Nennwert der Schutzvorrichtung nicht mehr als: 250 V, 20 A beträgt. ¡Advertencia! Este equipo utiliza el sistema de protección contra cortocircuitos (o sobrecorrientes) del edificio.

  • Page 112: Power Disconnection Warning

    Appendix B: System Specifications Power Disconnection Warning Warning! The system must be disconnected from all sources of power and the power cord removed from the power supply module(s) before accessing the chassis interior to install or remove system components (except for hot-swap components). 電源切断の警告...

  • Page 113: Equipment Installation

    SuperServer SYS-5039MP-H8TNR User's Manual ‫אזהרה מפני ניתוק חשמלי‬ ‫!אזהרה‬ ‫יש לנתק את המערכת מכל מקורות החשמל ויש להסיר את כבל החשמלי מהספק‬ ‫.לפני גישה לחלק הפנימי של המארז לצורך התקנת או הסרת רכיבים‬ ‫يجب فصم اننظاو من جميع مصادر انطاقت وإ ز انت سهك انكهرباء من وحدة امداد‬...

  • Page 114: Restricted Area

    Appendix B: System Specifications Attention Seul le personnel autorisé et le personnel de maintenance qualifié doivent être autorisés à installer, remplacer ou entretenir cet équipement.. !‫אזהרה‬ ‫.יש לאפשר רק צוות מורשה ואנשי שירות מוסמכים להתקין, להחליף או לטפל בציוד זה‬ ‫.ينبغي...
  • Page 115 SuperServer SYS-5039MP-H8TNR User's Manual Warnung Diese Einheit ist zur Installation in Bereichen mit beschränktem Zutritt vorgesehen. Der Zutritt zu derartigen Bereichen ist nur mit einem Spezialwerkzeug, Schloss und Schlüssel oder einer sonstigen Sicherheitsvorkehrung möglich. ¡Advertencia! Esta unidad ha sido diseñada para instalación en áreas de acceso restringido. Sólo puede obtenerse acceso a una de estas áreas mediante la utilización de una herramienta especial,...

  • Page 116: Battery Handling

    Appendix B: System Specifications Battery Handling CAUTION: There is risk of explosion if the battery is replaced by an incorrect type. Replace the battery only with the same or equivalent type recommended by the manu- facturer. Dispose of used batteries according to the manufacturer's instructions 電池の取り扱い...

  • Page 117: Redundant Power Supplies

    SuperServer SYS-5039MP-H8TNR User's Manual ‫.هناك خطر االنفجار إذا تم استبدال البطارية بنوع غري صحيح‬ ‫اسحبذال البطارية‬ ‫فقط بنفس النىع أو ما يعادلها مام أوصث به الرشمة املصنعة‬ ‫جخلص من البطاريات املسحعملة وفقا لحعليامت الرشمة الصانعة‬ 경고! 배터리를 잘못된 종류로 교체하면 폭발의 위험이 있습니다. 기존 배터리와 동일하거나 제조...
  • Page 118 Appendix B: System Specifications ¡Advertencia! Puede que esta unidad tenga más de una conexión para fuentes de alimentación. Para cortar por completo el suministro de energía, deben desconectarse todas las conexiones. Attention Cette unité peut avoir plus d'une connexion d'alimentation. Pour supprimer toute tension et tout courant électrique de l'unité, toutes les connexions d'alimentation doivent être débranchées.

  • Page 119: Backplane Voltage

    SuperServer SYS-5039MP-H8TNR User's Manual Backplane Voltage Warning! Hazardous voltage or energy is present on the backplane when the system is operating. Use caution when servicing. バックプレーンの電圧 システムの稼働中は危険な電圧または電力が、 バックプレーン上にかかっています。 修理する際には注意く ださい。 警告 当系统正在进行时，背板上有很危险的电压或能量，进行维修时务必小心。 警告 當系統正在進行時，背板上有危險的電壓或能量，進行維修時務必小心。 Warnung Wenn das System in Betrieb ist, treten auf der Rückwandplatine gefährliche Spannungen oder Energien auf.

  • Page 120: Comply With Local And National Electrical Codes

    Appendix B: System Specifications ‫هناك خطز مه التيار الكهزبايئ أوالطاقة املىجىدة عىل اللىحة‬ ‫عندما يكىن النظام يعمل كه حذ ر ا عند خدمة هذا الجهاس‬ 경고! 시스템이 동작 중일 때 후면판 (Backplane)에는 위험한 전압이나 에너지가 발생 합니다. 서비스 작업 시 주의하십시오. Waarschuwing Een gevaarlijke spanning of energie is aanwezig op de backplane wanneer het systeem in gebruik is.

  • Page 121: Product Disposal

    SuperServer SYS-5039MP-H8TNR User's Manual ‫תיאום חוקי החשמל הארצי‬ !‫אזהרה‬ .‫התקנת הציוד חייבת להיות תואמת לחוקי החשמל המקומיים והארציים‬ ‫تركيب املعدات الكهربائية يجب أن ميتثل للقىاويه املحلية والىطىية املتعلقة‬ ‫بالكهرباء‬ 경고! 현 지역 및 국가의 전기 규정에 따라 장비를 설치해야 합니다.
  • Page 122 Appendix B: System Specifications Attention La mise au rebut ou le recyclage de ce produit sont généralement soumis à des lois et/ou directives de respect de l'environnement. Renseignez-vous auprès de l'organisme compétent. ‫סילוק המוצר‬ !‫אזהרה‬ .‫סילוק סופי של מוצר זה חייב להיות בהתאם להנחיות וחוקי המדינה‬ ‫التخلص...
  • Page 123 SuperServer SYS-5039MP-H8TNR User's Manual Warnung Gefährlich Bewegende Teile. Von den bewegenden Lüfterblätter fern halten. Die Lüfter drehen sich u. U. noch, wenn die Lüfterbaugruppe aus dem Chassis genommen wird. Halten Sie Finger, Schraubendreher und andere Gegenstände von den Öffnungen des Lüftergehäuses entfernt.
  • Page 124 Verbindungskabeln, Stromkabeln und/oder Adapater, die Ihre örtlichen Sicherheitsstandards einhalten. Der Gebrauch von anderen Kabeln und Adapter können Fehlfunktionen oder Feuer verursachen. Die Richtlinien untersagen das Nutzen von UL oder CAS zertifizierten Kabeln (mit UL/CSA gekennzeichnet), an Geräten oder Produkten die nicht mit Supermicro gekennzeichnet sind.
  • Page 125 ‫.قيرح وأ لطع يف ببستي دق ىرخأ تالوحمو تالباك يأ مادختسا .ميلسلا سباقلاو لصوملا مجح‬ ‫ لبق نم ةدمتعملا تالباكلا مادختسا تادعملاو ةيئابرهكلا ةزهجألل ةمالسلا نوناق رظحي‬UL ‫ وأ‬CSA ‫( ةمالع لمحت يتلاو‬UL/CSA) ‫ لبق نم ةددحملاو ةينعملا تاجتنملا ريغ ىرخأ تادعم يأ عم‬Supermicro.
  • Page 126 사항을 준수하여 제공되거나 지정된 연결 혹은 구매 케이블, 전원 케이블 및 AC 어댑터를 사용하십시오. 다른 케이블이나 어댑터를 사용하면 오작동이나 화재가 발생할 수 있습니다. 전기 용품 안전법은 UL 또는 CSA 인증 케이블 (코드에 UL / CSA가 표시된 케이블)을 Supermicro 가 지정한 제품 이외의 전기 장치에 사용하는 것을 금지합니다. Stroomkabel en AC-Adapter...

  • Page 127: Appendix C System Specifications

    Appendix C: System Specifications Appendix C System Specifications Motherboard (per node) X11SPD-F 4.75" x 15.689" (120.65 mm x 398.50 mm) Processors (per node) Single Intel® Xeon® Scalable Processor up to 165W TDP Note: Please refer to the motherboard specifications pages on our website for updates to supported processors. BIOS (per node) 256Mb SPI AMI BIOS SM Flash UEFI BIOS ACPI 6.1, SMBIOS 2.7, PCI F/W 3.0, Plug-and-Play (PnP), RTC wakeup...
  • Page 128 SuperServer SYS-5039MP-H8TNR User's Manual Operating Environment Operating Temperature: 10º to 35º C (50º to 95º F) Non-operating Temperature: -40º to 70º C (-40º to 158º F) Operating Relative Humidity: 8% to 90% (non-condensing) Non-operating Relative Humidity: 5% to 95% (non-condensing)

  • Page 129: Appendix D Uefi Bios Recovery

    Warning: Do not upgrade the BIOS unless your system has a BIOS-related issue. Flashing the wrong BIOS can cause irreparable damage to the system. In no event shall Supermicro be liable for direct, indirect, special, incidental, or consequential damages arising from a BIOS update.
  • Page 130 SuperServer SYS-5039MP-H8TNR User Manual might need several minutes to locate the SUPER.ROM file if the media size becomes too large due to the huge volumes of folders and files stored in the device. To perform UEFI BIOS recovery using a USB-attached device, follow the instructions below.
  • Page 131 Appendix D: UEFI BIOS Recovery Note: At this point, you may decide if you want to start the BIOS recovery. If you decide to proceed with BIOS recovery, follow the procedures below. 4. When the screen as shown above displays, use the arrow keys to select the item "Proceed with flash update"...
  • Page 132 SuperServer SYS-5039MP-H8TNR User Manual 7. Press <Del> continuously during system boot to enter the BIOS Setup utility. From the top of the tool bar, select Boot to enter the submenu. From the submenu list, select Boot Option #1 as shown below. Then, set Boot Option #1 to [UEFI AP:UEFI: Built-in EFI Shell].
  • Page 133 Appendix D: UEFI BIOS Recovery 9. The screen above indicates that the BIOS update process is complete. When you see the screen above, unplug the AC power cable from the power supply, clear CMOS, and plug the AC power cable in the power supply again to power on the system. 10.