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® UPER SUPER S2QR6 SUPER S2QE6 USER’S MANUAL...
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The State of California, County of Santa Clara shall be the exclusive venue for the resolution of any such disputes. Supermicro's total liability for all claims will not exceed the price paid for the hardware product. Unless you request and receive written permission from SUPER MICRO COMPUTER, you may not copy any part of this document.
Chapter 2 begins with instructions on handling static-sensitive devices. Read this chapter when you want to install the processor and system memory and when mounting the S2QR6/S2QE6 in a chassis. Also refer to this chapter to connect the floppy and hard disk drives, the SCSI drives, the...
Chipset Overview ... 1-13 Special Features ... 1-13 Alert on LAN 2 (optional) ... 1-13 Recovery from AC Power Loss ... 1-13 ATI Graphics Controller (S2QE6 only) ... 1-13 PC Health Monitoring ... 1-14 ACPI/PC 98 Features ... 1-16 Power Supply ... 1-17 Super I/O ...
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Front Side Bus Speed ... 2-18 Power Supply Failure Alarm Enable/Disable ... 2-18 Overheat Buzzer Alarm Enable/Disable ... 2-19 CMOS Clear (S2QE6 only) ... 2-19 BIOS Select ... 2-19 Onboard LAN/NIC Enable/Disable ... 2-19 LVD Channel A SCSI Termination Enable/Disable ... 2-20 LVD Channel B SCSI Termination Enable/Disable ...
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IDE Connectors ... 2-22 50-pin Legacy SCSI Connector ... 2-22 Ultra160 SCSI Connectors ... 2-23 2-11 IRQs ... 2-24 2-12 Installing Software Drivers ... 2-24 Chapter 3: Troubleshooting Troubleshooting Procedures ... 3-1 Before Power On ... 3-1 No Power ... 3-1 No Video ...
One (1) Supermicro Mainboard One (1) ribbon cable for floppy drives One (1) 40-pin IDE ribbon cable. One (1) serial COM 2 cable (for S2QE6 only) One (1) I/O backpanel shield Two (2) Slot 2 CPU termination cards. SCSI Accessories...
UPER S2QR6/S2QE6 User's Manual Figure 1-3. SUPER S2QR6 Layout ATX POWER #2 KB/ MOUSE 3V/PCI64 #2 3V/PCI64 #1 5V/PCI64 #4 JP58 5V/PCI64 #3 5V/PCI64 #2 5V/PCI64 #1 PCI32 #1 PCI32 #2 Also see the figure on page 2-9 for the locations of the Front Control Panel (JF1) Connectors and 2-10 for the locations of the I/O ports.
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Jumper Description LVD SCSI Ch A Term. (p. 2-20) Open (Enabled) LVD SCSI Ch B Term. (p. 2-20) Open (Enabled) 50pin SCSI Ch B Term. (p. 2-20)Open (Enabled) Onboard SCSI Enable (p. 2-20) Open (Enabled) Front Side Bus Speed (p. 2-18) Closed (100 MHz) Spread Spectrum Enable JP55 3rd P/S Failure Alarm (p.
UPER S2QR6/S2QE6 User's Manual Figure 1-4. SUPER S2QE6 Layout Chassis Fan Chassis Fan KB/ MOUSE 3V/PCI64 #2 3V/PCI64 #1 JP58 JP60 JP59 RAGE XL Also see the figure on page 2-9 for the locations of the Front Control Panel (JF1) Connectors and 2-10 for the locations of the I/O ports.
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Jumper Description LVD SCSI Ch A Term. (p. 2-20) Open (Enabled) LVD SCSI Ch B Term. (p. 2-20) Open (Enabled) 50pin SCSI Ch B Term. (p. 2-20)Open (Enabled) Onboard SCSI Enable (p. 2-20) Open (Enabled) JBT1 CMOS Clear (p. 2-19) Front Side Bus Speed (p.
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UPER S2QR6/S2QE6 User's Manual Pentium III/II Pentium III/II Xeon 100 MHz Host Bus 64-bit, 66/33 MHz PCI Bridge 64-bit, 33 MHz PCI 32-bit, 33 MHz PCI U D M A / 3 3 IDE Ports Figure 1-5. ServerWorks HE Classic Chipset: NOTE: The 32-bit PCI slots are included only on the S2QR6.
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Features of the S2QR6/S2QE6 • Up to four Pentium III Xeon 400-700 MHz processors at 100 MHz bus speed and Cascades 5V/12V processors Note: Please refer to the support section of our web site for a complete listing of supported processors.
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• Multiple FSB clock frequency selections (set in BIOS) CD Utilities • BIOS flash upgrade utility • Drivers for chipset utilities Dimensions • SUPER S2QR6 - SWTX: 17.9" x 13" (455 x 330 mm) • SUPER S2QE6 - SWTX: 16" x 13" (406 x 330 mm) 1-12...
The North Bridge also packs and unpacks data for PCI accesses, which reserves more processor bandwidth for multiprocessor motherboards. The South Bridge provides various integrated functions, including the PCI to ISA bridge and support for UDMA33, security (passwords and system pro- tection), Plug &...
UPER S2QR6/S2QE6 User's Manual ATI Graphics Controller (S2QE6 only) The S2QE6 has an integrated ATI video controller based on the Rage XL graphics chip. The Rage XL is the first accelerator in the world to provide integrated support for digital flat panel monitors.
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The system BIOS is protected by hardware so that no virus can infect the BIOS area. The user can only change the BIOS content through the flash utility provided by SUPERMICRO. infecting the BIOS area and destroying valuable data. Auto-Switching Voltage Regulator for the CPU Core The auto-switching voltage regulator for the CPU core can support up to 20A current and auto-sense voltage IDs ranging from 1.3V to 3.5V.
UPER S2QR6/S2QE6 User's Manual ACPI/PC 98 Features ACPI stands for Advanced Configuration and Power Interface. specification defines a flexible and abstract hardware interface that pro- vides a standard way to integrate power management features throughout a PC system, including its hardware, operating system and application soft- ware.
LAN traffic is kept to a minimum and users are not interrupted. The motherboards have a 3-pin header (WOL) to connect to the 3-pin header on a Network Interface Card (NIC) that has WOL capability.
ATX power supply Specification 2.02 or above. you choose should provide two (2) 10-pin power connectors, which should both be connected to the S2QR6/S2QE6. Also, in areas where noisy power transmission is present, you may choose to install a line filter to shield the computer from noise.
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Chapter 1: Introduction The Super I/O provides functions that comply with ACPI (Advanced Con- figuration and Power Interface), which includes support of legacy and ACPI power management through an SMI or SCI function pin. It also features auto power management to reduce power consumption. The IRQs, DMAs and I/O space resources of the Super I/O can flexibly adjust to meet ISA PnP requirements, which suppport ACPI and APM (Ad- vanced Power Management).
Tools Required The only tools you will need to install the S2QR6/S2QE6 into a chassis are a long and a short Philips screwdriver. Handling the S2QR6/S2QE6 Motherboard Static electrical discharge can damage electronic components. To prevent damage to any printed circuit boards (PCBs), it is important to handle them very carefully.
Check compatibility of motherboard ports and I/O shield: The S2QR6/S2QE6 requires a chassis big enough to support a 13" x 18" motherboard, such as the Supermicro SC850 and SC840. Make sure that the I/O ports on the motherboard properly align with their respective holes in the I/O shield at the back of the chassis.
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Slot 2 socket. Then insert the four DRM screws to the base of each DRM and secure the units by screwing them in firmly. Empty processor slots: Terminator cards (Supermicro p/n TMR-008) must be installed in the processor slot(s) left empty in 1, 2 and 3-way configurations. Figure 2-1.
The MEC must be populated in the manner described in Step 2 below. Memory Support: The S2QR6/S2QE6 supports 128MB/256MB/ 512MB/ and 1 GB registered ECC DIMM memory modules. Non-ECC or unbuffered SDRAM memory are not supported.
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when inserting the DIMMs you may bend and damage the MEC. Installing the MEC: After populating the MEC, carefully install it back into its slot on the motherboard, making sure it is fully seated. Finish by tightening the two screws that secure the retention plate to the chassis. Figure 2-2.
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UPER S2QR6/S2QE6 User's Manual Figure 2-3. Side View of DIMM Installation into Slot PC100 Notches To Install: Insert module vertically and press down until it snaps into place. Pay attention to the two notches. To Remove: Use your thumbs to gently push near the edge of both ends of the module.
Adding PCI Cards 64-bit PCI slots: The S2QR6/S2QE6 has six 64-bit PCI slots. Two of these are 66 MHz slots that are keyed to only accept 66 MHz, 3V PCI cards. The other four 64-bit slots run at 33 MHz and are backward compatible with 32-bit cards.
Connecting Cables Now that the motherboard, memory and add-on cards are installed, the next step is to connect the cables to the S2QR6/S2QE6. These include the data (ribbon) cables for the peripherals and front control panel, the power fail signal (PWR P) cable and the power cables.
Front Control Panel Connections The JF1 header on the S2QR6/S2QE6 contains header pins for various front control panel connectors. locations of the speaker, overheat LED, keyboard lock, chassis intrusion, I2C, network activity LED, power fail, fan fail, 5v standby, power LED, IDE drive activity LED, power on LED, reset switch, USB0 and alarm reset headers.
UPER S2QR6/S2QE6 User's Manual I/O Port Connector Locations The I/O ports on the S2QR6/S2QE6 are color coded in conformance with the PC 99 specification. and locations of the various I/O ports. Figure 2-6. Mouse (Green) Keyboard (Purple) Ports (Black) Mouse...
Connector Definitions Power Supply Connectors The S2QR6/S2QE6 has two pri- mary power supply connectors: at U21 and U23. You should connect power to both of these two pri- mary connectors. Each 20-pin power connector can handle up to 9 amps maximum. See Table 2-1 for pin definitions.
UPER S2QR6/S2QE6 User's Manual IDE LED The IDE Drive LED connection is located on pins 7 and 9 of JF1. This will send an indication of IDE disk activity to the front control panel. See Table 2-5 for pin defi- nitions and Figure 2-5 for pin loca- tions.
Reset The Reset connection is located on pins 15 and 17 of JF1. connector attaches to the hard- ware reset switch on the com- puter chassis. See Table 2-9 for pin definitions and Figure 2-5 for pin locations. Chassis Intrusion (CI) A Chassis Intrusion connection is located on pin 20 of JF1.
UPER S2QR6/S2QE6 User's Manual Overheat LED (OH) Connect an LED to the OH connec- tion on pin 26 of JF1 to provide advanced warning of chassis overheating. Refer to Table 2-13 for pin definitions and Figure 2-5 for pin locations.
COM2 is located below the parallel port on the S2QR6 (see Figure 2-8) and is included as a header beside the mouse port on the S2QE6 (see page 1-8). See Table 2-17 for pin definitions. ATX PS/2 Keyboard and PS/2 Mouse Ports The ATX PS/2 keyboard and the PS/2 mouse are located on J18.
UPER S2QR6/S2QE6 User's Manual Universal Serial Bus (USB) Two USB connectors are located on U25; USB0 is on the bottom and USB1 is on the top. shared with pins 25, 27, 29 and 31 of JF1 (see page 2-9). Only one of these two connections may be used at one time.
DIP Switch 1: Core/Bus Ratio Two DIP switches labeled SW1 and SW2 are located on the S2QR6/S2QE6. Each has four in- dividual switches. The four on Dip Switch 1 are used to set the core/ bus ratio. The example on the right will show you which CPU Core/Bus Ratio to use.
Front Side Bus Speed JP1 sets the FSB speed. the S2QR6/S2QE6 only runs at a 100 MHz front side bus speed, you do not need to change this setting. Table 2-23 describes the jumper settings.
Always re- move the AC power cord from the system before clearing CMOS. BIOS Select (Dual BIOS is optional) The S2QR6/S2QE6 has two BIOS chip sockets to provide a backup (backup chip optional) if the BIOS becomes corrupted. Switching from one BIOS chip to the other is done manually with jumper JP57.
UPER S2QR6/S2QE6 User's Manual LVD Channel A SCSI Termination Enable/ Disable Jumper JA2 allows you to enable or disable termination for the LVD Channel A SCSI connector. normal (default) position is open to enable SCSI termination. Table 2-29 for jumper settings.
2-10 Parallel Port, Floppy/Hard Disk Drive and SCSI Connections Use the following information to connect the floppy and hard disk drive cables. • The floppy disk drive cable has seven twisted wires. • A red mark on a wire typically designates the location of pin 1. •...
UPER S2QR6/S2QE6 User's Manual IDE Connectors There are no jumpers to config- ure the onboard IDE connectors J13 and J14. Refer to Table 2- 35 for pin definitions. 50-pin Legacy SCSI Connector Refer to Table 2-36 for pin defini- tions of the 50-pin Legacy SCSI connector located at JA5.
Ultra160 SCSI Connectors Refer to Table 2-37 for pin definitions for the Ultra160 SCSI connectors located at JA1 and JA3. Table 2-37 68-pin Ultra160 SCSI Connectors (JA1, JA3) Connector Connector Contact N u m b e r Signal Names +DB(12) +DB(13) +DB(14) +DB(15)
2-12 Installing Software Drivers After all the hardware has been installed you must install the software drivers. The necessary drivers are all included on the Supermicro CD that came packaged with your motherboard. CDROM drive, a driver display screen should appear. (If this display does not appear, click on the My Computer icon and then on the icon representing your CDROM drive.
Troubleshooting Procedures Use the following procedures to troubleshoot your system. followed all of the procedures below and still need assistance, refer to the ‘Technical Support Procedures’ and/or ‘Returning Merchandise for Service’ section(s) in this chapter. before adding, changing or installing any hardware components. Before Power On 1.
UPER S2QR6/S2QE6 User's Manual If you are a system integrator, VAR or OEM, a POST diagnos- tics card is recommended. For I/O port 80h codes, refer to Memory Errors 1. Make sure the DIMM modules are properly and fully installed into the MEC.
What are the various types of memory that the S2QR6/ S2QE6 motherboard can support? Answer: The S2QR6/S2QE6 requires the use of an MEC (Memory Expan- sion Card). The MEC has 16 DIMM slots that support 168-pin, unbuffered 3.3V SDRAM and ECC (Error-Correcting Code) memory. (Check the Memory ECC Mode in BIOS to enable the use of ECC.) Modules of 128MB/256MB/...
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Answer: It is recommended that you do not upgrade your BIOS if you are experiencing no problems with your system. Updated BIOS files are located on our web site at http://www.supermicro.com. Please check our BIOS warning message and the info on how to update your BIOS on our web site.
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Chapter 3: Troubleshooting Question: Do I need the CD that came with your motherboard? Answer: The supplied compact disc has quite a few drivers and programs that will greatly enhance your system. We recommend that you review the CD and install the applications you need. Applications on the CD include chipset drivers for Windows and security and audio drivers.
UPER S2QR6/S2QE6 User's Manual Returning Merchandise for Service A receipt or copy of your invoice marked with the date of purchase is required before any warranty service will be rendered. service by calling your vendor for a Returned Merchandise Authorization (RMA) number.
Introduction This chapter describes the AMIBIOS for the Super S2QR6/S2QE6 system board. The AMI ROM BIOS is stored in a Flash EEPROM and can be easily upgraded using a floppy disk-based program. Note: Due to periodic changes to BIOS, some settings may have been added or deleted and might not yet be recorded in this manual.
UPER S2QR6/S2QE6 Manual BIOS Features • Supports Plug and Play V1.0A and DMI 2.3 • Supports Intel PCI 2.2 (Peripheral Component Interconnect) local bus specification • Supports Advanced Power Management (APM) specification v 1.1 • Supports ACPI • Supports Flash ROM AMIBIOS supports the LS120/zip drive: •...
UPER S2QR6/S2QE6 Manual Standard CMOS Setup Date and Time Configuration Select the Standard option. Select the Date/Time icon. The current values for each category are displayed. keyboard. Floppy A Floppy B Choose the Floppy Drive A or B icon to specify the floppy drive type.
Entering Drive Parameters You can also enter the hard disk drive parameters. The drive parameters are: Parameter Description Type The number for a drive with certain identification parameters. Cylinders The number of cylinders in the disk drive. Heads The number of heads. WPCOM The size of a sector gets progressively smaller as the track diameter diminishes.
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UPER S2QR6/S2QE6 Manual Enabled AMIBIOS does not test system memory above 1 MB. AMIBIOS does not wait up to 40 seconds for a READY signal from the IDE hard disk drive. If a READY signal is not received immediately from the IDE drive, AMIBIOS does not configure that drive.
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The settings for this option are BIOS or Silent . If selected as BIOS, the POST will start with the normal sign-on message screen. If Silent is selected, the POST will start with the Supermicro screen Display Mode at Add-On ROM Init The settings for this option are Force BIOS or Keep Current .
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UPER S2QR6/S2QE6 Manual be used as a warning tool, not as a tool to predict the device reliability. Boot Up Num-Lock Settings for this option are On or Off . When this option is set to On , the BIOS turns off the Num Lock key when the system is powered on. This will enable the end user to use the arrow keys on both the numeric keypad and the keyboard.
Chapter 4: BIOS System BIOS Cacheable When set to Enabled , the contents of the F0000h system memory segment can be read from or written to cache memory. The contents of this memory segment are always copied from the BIOS ROM to system The settings are Enabled or Disabled .
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UPER S2QR6/S2QE6 Manual Write Combining for P6-to-PCI: The settings for this option are Enabled or disabled. This bit enables or disables the combining (bursting) of accesses within the PCI memory regions. The BWCR register provides the write combining enable/disable bit for each region.
Chapter 4: BIOS Scrubbing Enable The settings for this option are Disabled or Enabled . Set "Enabled" to allow the CNB30 to perform "scrubbing"(--i.e. writing the ECC corrected memory data back to the DRAM). MPS Support The settings for this option are Enabled and Disabled . Select "Enabled"...
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UPER S2QR6/S2QE6 Manual Suspend Time Out When in the AMP mode, this option specifies the length of a period of system inactivity while in the suspend state. When this length of time expires, the computer enters a suspend power. The settings are Disabled and 1 Min through 14 Min in 1 minute increments.
Chapter 4: BIOS IRQ12: The settings are: Ignore, and Monitor . IRQ14: The settings are: Ignore, and Monitor . IRQ15: The settings are: Ignore, and Monitor . USB Resume When in the AMP mode, this option allows you to wake up the system from a USB device.
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UPER S2QR6/S2QE6 Manual CPU is directed to both the PCI VGA device's palette registers and the ISA VGA palette registers. This will permit the palette registers of both devices to be identical. This option must be set to Enabled if any ISA adapter card installed in the system requires VGA palette snooping.
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Chapter 4: BIOS Onboard LAN IRQ Use these options to specify the IRQ priority for Onboard LAN devices installed in the PCI expansion slots. The settings are Auto, (IRQ) 3, 4, 5, 7, 9, 10, and 11 in priority order. PCI Slot 3 and Onboard SCSI IRQ Use these options to specify the IRQ priority for PCI Slot 3 and Onboard SCSI devices installed in the PCI expansion slots.
UPER S2QR6/S2QE6 Manual reserve the IRQ by assigning an ISA/EISA setting to it. Onboard I/O is configured by AMIBIOS. All IRQs used by onboard I/O are configured as PCI/PnP. IRQ14 and 15 will not be available if the onboard PCI IDE is enabled. If all IRQs are set to ISA/EISA and IRQ14 and 15 are allocated to the onboard PCI IDE, IRQ 9 will still be available for PCI and PnP devices.
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CPU2 Fan CPU3 Fan CPU4 Fan The above features are for PC Health Monitoring. The motherboards with W83781D have seven onboard voltage monitors for the CPU core, CPU I/ O, +3.3V, +5V, -5V, +12V, and-12V, and for the four-fan status monitor.
UPER S2QR6/S2QE6 Manual Serial Port2 Duplex Mode This option is enabled by the selection made in the previ- ous Serial Port 2 Mode option. This makes the IR Duplex Mode available, which can be set to either Half or Full .
Change User Password Change Supervisor Password The system can be configured so that all users must enter a password every time the system boots or when the AMIBIOS setup is executed. You can set either a Supervisor password or a User password. do not want to use a password, just press <Enter>...
UPER S2QR6/S2QE6 Manual Save Current Settings and Exit Highlight this and hit <Enter> when you wish to save any changes made to settings in BIOS and exit back to the system boot-up procedure. Exit Without Saving Highlight this and hit <Enter> when you wish to exit back to the system boot-up procedure without saving any changes.
Appendix A: BIOS Error Beep Codes Appendix A BIOS Error Beep Codes & Messages During the POST (Power-On Self-Test) routines, which are performed each time the system is powered on, errors may occur. Non-fatal errors are those which, in most cases, allow the system to continue the boot-up process.
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UPER S2QR6/S2QE6 User's Manual AMIBIOS Error Beep Codes 1 beep: System needs to update BIOS. Insert the diskette in that has the system BIOS file (SUPER.ROM) in the root directory. 2 beeps: BIOS file (SUPER.ROM) absent or not in root directory.
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If you hear... 5 short and 1 long beeps 6 short and 1 long beeps 7 short and 1 long beeps Appendix A: BIOS Error Beep Codes it's because... no memory is installed EDO memory detected SMBUS (System Manage- ment Bus) error...
Appendix B: AMIBIOS POST Diagnostic Error Messages AMIBIOS POST Diagnostic Error Messages This section describes the power-on self-tests (POST) port 80 codes for the AMIBIOS. Check Point Description Code copying to specific areas is done. to INT 19h boot loader next. NMI is Disabled.
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UPER S2QR6/S2QE6 User's Manual Check Point Description The keyboard controller command byte is written. Next, issuing the pin 23 and 24 blocking and unblocking commands. Next, checking if the <End or <Ins> keys were pressed during Initialize CMOS RAM in every boot AMIBIOS POST option was set in AMIBCP or the <End>...
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Appendix B: AMIBIOS POST Diagnostic Error Messages Check Point Description Initialization before setting the video mode is complete. Configuring the monochrome mode and color mode settings next. Bus initialization system, static, output devices will be done next, if present. Passing control to the video ROM to perform any required configuration before the video ROM test.
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UPER S2QR6/S2QE6 User's Manual Check Point Description Initializing the bus input, IPL, and general devices next, if present. Displaying bus initialization error messages. The new cursor position has been read and saved. Displaying the Hit <DEL> message next. Preparing the descriptor tables next.
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Appendix B: AMIBIOS POST Diagnostic Error Messages Check Point Description The memory below 1 MB has been cleared via a soft reset. Clearing the memory above 1 MB next. The memory above 1 MB has been cleared via a soft reset.
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UPER S2QR6/S2QE6 User's Manual Check Point Description The DMA page register test passed. DMA Controller 1 base register test next. The DMA controller 1 base register test passed. Performing the DMA controller 2 base register test next. The DMA controller 2 base register test passed.
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Appendix B: AMIBIOS POST Diagnostic Error Messages Check Point Description programming been completed. Uncompressing the WINBIOS Setup code and executing the AMIBIOS Setup or WINBIOS Setup utility next. Returned from WINBIOS Setup and cleared the screen. Performing any necessary programming after WINBIOS Setup next.
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UPER S2QR6/S2QE6 User's Manual Check Point Description Any initialization required after the option ROM test has been completed. printer base address next. Set the timer and printer base addresses. RS-232 base address next. Returned Performing Coprocessor test next. Required initialization before the Coprocessor test is over.
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Appendix B: AMIBIOS POST Diagnostic Error Messages Check Point Description Returned Next, performing the E000 option ROM had control. Initialization completed. Displaying the system configuration next. Building the multiprocessor table, if necessary. POST next. The system configuration is displayed. Uncompressing the DMI data and initializing DMI. Copying any code to specific areas.
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