MSI S5063G480RAE20 User Manual
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MSI S5063G480RAE20 User Manual

MSI S5063G480RAE20 User Manual

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S5063G480RAE20
MS-S405
Server System
User Guide
1

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Summary of Contents for MSI S5063G480RAE20

  • Page 1 S5063G480RAE20 MS-S405 Server System User Guide...

  • Page 2: Table Of Contents

    Contents Regulatory Notices ........................4 Safety Information ......................7 System Specifications ......................9 System Overview ........................11 Front View ......................... 11 Rear View .......................... 11 Internal View ........................12 Rear I/O Panel ........................13 System LED Indicators ......................14 Rear I/O Panel LAN LEDs ....................14 Rear I/O Panel System LEDs .....................
  • Page 3 System Fan Module .......................26 Installing 8080 Hot-swap System Fan (Front) ..............26 Installing 8080 Hot-swap System Fan (Middle) ............... 27 System Fan Cage ........................28 Installing 8080 Middle Fan Cage ..................28 Removing 8080 Middle Fan Cage ..................29 Air Duct ...........................30 Installing the Air Duct .......................

  • Page 4: Regulatory Notices

    Regulatory Notices WEEE Statement Under the European Union ( “EU” ) Directive on Waste Electrical and Electronic Equipment, Directive 2012/19/EU, products of “electrical and electronic equipment” cannot be discarded as municipal waste anymore and manufacturers of covered electronic equipment will be obligated to take back such products at the end of their useful life.

  • Page 5: Chemical Substances Information

    Chemical Substances Information In compliance with chemical substances regulations, such as the EU REACH Regulation (Regulation EC No. 1907/2006 of the European Parliament and the Council), MSI provides the information of chemical substances in products at: https://csr.msi.com/global/index Battery Information Please take special precautions if this product comes with a battery.

  • Page 6: Environmental Policy

    US. Copyright and Trademarks Notice Copyright © Micro-Star Int’ l Co., Ltd. All rights reserved. The MSI logo used is a registered trademark of Micro-Star Int’ l Co., Ltd. All other marks and names mentioned may be trademarks of their respective owners.

  • Page 7: Safety Information

    Safety Information Please read and follow these safety instructions carefully before ⚠ installing, operating or performing maintenance on the server. General Safety Instructions ● Always read the safety instructions carefully. ● Keep this User’ s Manual for future reference. ● Keep this equipment away from humidity. ●...

  • Page 8: Assembly And Installation

    Assembly and Installation This equipment must be installed in restricted access areas by qualified personnel to comply with safety standards set by the NEC and IEC 62368-1, Third Edition, for Information Technology Equipment. Lifting and Placement ● WARNING: This server is heavy. ●...

  • Page 9: System Specifications

    System Specifications SKU Name S5063G480RAE20 Form factor Dimensions 438.5mm(17.2” )W x 175mm(6.88” )H x 800mm(31.4” )D Processor Dual Intel® Xeon® 6700E- series, 6500P and 6700P-series processors, TDP up to 350W. Socket 2 x Intel® LGA 4710 (Socket E2) Chipset ● 32 x DDR5 DIMM slots, 8 channels per CPU (2DPC), RDIMM/ RDIMM-3DS/ MRDIMM* - Max Frequency: »...
  • Page 10 SKU Name S5063G480RAE20 ● 2 x Air cooling modules for max 350W CPU Cooling ● 10 x 8080 hot-swap system fans ● Operating Temperature: 0°C ~ 35°C (50°F ~ 95°F) Environment ● Non-operating Temperature: -20°C ~ 70°C (-4°F to 158°F) ●...

  • Page 11: System Overview

    System Overview Front View 20 x E1.S Hot-Swap Drive Bays 5 x 8080 Hot-Swap System Fans Rear View #1~8: FHFL double-wide slots #9: FHFL single-wide slot Power Supply Units Rear IO Panel #10~13: FHFL single-wide slots...

  • Page 12: Internal View

    Internal View CPU 0 CPU 1 (3+1) 3200W CRPS PSU PCIe Switch Board Motherboard 5 x 8080 Hot-Swap System Fans (upper, for GPU) 5 x 8080 Hot-Swap System Fans (bottom, for CPU) 20 x Hot-Swap E1.S drive bays (PCIe 5.0 x4 NVMe)

  • Page 13: Rear I/O Panel

    Rear I/O Panel 10GBase-T Ethernet Port The standard RJ45 LAN jack is provided for connection to the Local Area Network (LAN). You can connect a network cable to it. System Power LED Button UID LED Button 1000Base-T Ethernet Port (for mgmt.) The standard RJ45 LAN jack is provided for connection to the Local Area Network (LAN).

  • Page 14: System Led Indicators

    System LED Indicators Rear I/O Panel LAN LEDs 10GBase-T Ethernet Port 1000Base-T Ethernet Port (for mgmt.) 10GBase-T Ethernet Port Status Description No link Green Linked Link/ Activity LED LINK/ACT SPEED Data activity Blinking No link Speed LED Orange 1 Gbps Green 10 Gbps 1000Base-T Ethernet Port (for mgmt.)

  • Page 15: Rear I/O Panel System Leds

    Rear I/O Panel System LEDs UID Button/ LED Power Button/ LED LED State Description System Power LED Green System power is on System power is on ACPI S0 state System power is off System power is on ACPI S5 state UID LED Blue Identify active via command or button...

  • Page 16: Block Diagram

    Block Diagram CPU0 CPU1 DDR5 CH A~D 8 x DIMM Slots 8 x DIMM Slots DDR5 CH A~D (2DPC) (2DPC) LGA 4710 (Socket E2) LGA 4710 (Socket E2) CPU1_DIMM_A1/ A2 CPU0_DIMM_A1/ A2 CPU1_DIMM_D1/ D2 24 GT/s CPU0_DIMM_D1/ D2 4 x UPI 8 x DIMM Slots 8 x DIMM Slots DDR5 CH E~H...

  • Page 17: Motherboard Layout

    Motherboard Layout JCHASSIS1 JMIPI1 P0_DIM_H1 P0_DIM_H2 P0_DIM_G1 P0_DIM_G2 P0_DIM_F1 JFFAN1 P0_DIM_F2 JPDB1 M2_1 P0_DIM_E1 JMFAN1 P0_DIM_E2 JMCIO6 JVROC1 JMCIO5 JMCIO2 CPU0 JMCIO1 JMCIO0 P0_DIM_A2 JMCIO3 P0_DIM_A1 JMCIO8 P0_DIM_B2 P0_DIM_B1 JMCIO4 CN_NCSI1 P0_DIM_C2 P0_DIM_C1 DCSCM1 JMCIO7 P0_DIM_D2 P0_DIM_D1 JCPLD1 P1_DIM_H1 JVPP1 P1_DIM_H2 JMCIO18 P1_DIM_G1...

  • Page 18: Motherboard Components Table

    Motherboard Components Table Name Description Connectors, Headers and Other Components CPU0, CPU1 Intel® LGA 4710 socket (Socket E2) P0_DIM_A1/A2~ DDR5 DIMM slots (from CPU0) P0_DIM_H1/H2 P1_DIM_A1/A2~ DDR5 DIMM slots (from CPU1) P1_DIM_H1/H2 J9, J10 2-pin P12V_AUX power connectors (for rear I/O board) 2-pin P12V_AUX power connectors (from PDB board) J11~J14 4-pin power connectors (for CEM riser cards)

  • Page 19: Motherboard Components

    Motherboard Components JCHASSIS1: Chassis Intrusion Header This header connects to the chassis intrusion switch cable, which monitors and detects any unauthorized opening in the server’ s chassis. When the chassis is opened, this header sends a signal to notify the Baseboard Management Controller (BMC) to record the intrusion event or trigger an alert for administrators.

  • Page 20: Bat1: Cmos Battery

    BAT1: CMOS Battery If the CMOS battery is out of charge, the time in the BIOS will be reset and the data of system configuration will be lost. In this case, you need to replace the CMOS battery. Replacing CMOS battery 1.

  • Page 21: Motherboard Jumpers

    Motherboard Jumpers Important ⚠ Avoid adjusting jumpers when the system is on; it will damage the motherboard. JPASSWORD_C_1 JBAT1 Jumper Name Default Setting Description Password Clear Jumper JPASSWORD_C_1 1-2: Normal (default) 2-3: Clear password CMOS Clear Jumper JBAT1 1-2: Normal (default) 2-3: Clear CPU0 CMOS...

  • Page 22: Motherboard Leds

    Motherboard LEDs LED_H1, LED_L1: Port 80 Debug LEDs The Port 80 Debug LEDs display progress and error codes during and after POST (Power-On Self Test). Hexadecimal Character Table Hexadecimal LED display Hexadecimal LED display...

  • Page 23: Getting Started

    Getting Started Important ⚠ All information is subject to change without prior notice. ● The system photos are provided for demonstration purposes only. The appearance ● and internal view of your system may vary. Necessary Tools Screwdriver Pliers Tweezers Anti-Static Gloves Safety Precautions The following precautions should be observed while handling the system: ●...

  • Page 24: System Setup

    System Setup Important ⚠ Before removing or installing any components, make sure the system is not turned on or connected to the power. Drive Bay Installing E1.S Drive 1. Press the release button to open the latch and eject the E1.S drive assembly from the drive bay.

  • Page 25: System Cover

    System Cover Removing System Covers 1. Remove the screws securing both sides of the chassis. 2. Press down on the latches and slide the cover to the back, then lift it off the system.

  • Page 26: System Fan Module

    System Fan Module Installing 8080 Hot-swap System Fan (Front) 1. Press the release tab behind the handle, then slide the fan into the slot. 2. Release the tab to allow the fan lock securely into place.

  • Page 27: Installing 8080 Hot-Swap System Fan (Middle)

    Installing 8080 Hot-swap System Fan (Middle) 1. Align the fan connectors with the slot. 2. Press and hold the fan release tabs, then slide the fan assembly fully into the slot. 3. Release the tabs to allow the fan to lock securely into place.

  • Page 28: System Fan Cage

    System Fan Cage Installing 8080 Middle Fan Cage Important ⚠ Ensure all cables are clear of the fan cage installation area before proceeding. 1. Align the fan cage with the chassis by matching the studs to their designated slots. 2. Lower the fan cage carefully until it is firmly seated and fully engaged. As the middle fan cage is lowered, it will push the air duct forward and press it down ●...

  • Page 29: Removing 8080 Middle Fan Cage

    Removing 8080 Middle Fan Cage Important ⚠ Ensure all cables are clear of the fan cage installation area before proceeding. 1. Loosen the screws on both sides of the chassis securing the fan cage. 2. Lift the fan cage carefully upward until it disengages from the studs. 3.

  • Page 30: Air Duct

    Air Duct Installing the Air Duct 1. Lower the air duct into place until it is securely seated. 2. As the middle fan cage is installed, it will push the air duct forward and press it down into position. (see “ Installing the 8080 Middle Fan Cage”...

  • Page 31: Removing The Air Duct

    Removing the Air Duct 1. Remove the middle fan cage to release pressure on the air duct. (see “ Removing the 8080 Middle Fan Cage” ) 2. Slide the air duct backward slightly to clear the front hooks, then lift the air duct upward to remove it from the system.

  • Page 32: Cpu & Heatsink

    CPU & Heatsink Use appropriate ground straps, gloves and ESD mats to protect yourself from electrostatic discharge (ESD) while installing the processor. CPU0 CPU1 Important ⚠ While replacing the CPU, always turn off the power supply or unplug the power ●...

  • Page 33: Assembly Overview

    Assembly Overview Important ⚠ Illustrations are for demonstration purposes only; actual parts may vary. 2U Heatsink Processor Heatsink Module (PHM) Processor Carrier Processor Processor Socket Bolster Plate Socket Cover Important ⚠ Please check the instruction that come with your heatsink and thermal paste for ●...

  • Page 34: Installing Cpu & Heatsink

    Installing CPU & Heatsink Before installing the CPU and heatsink, remove the 8080 fan cage and air duct. (see “ Removing the 8080 Middle Fan Cage” and “Removing the Air Duct” ) 1. Place the processor carrier on top of the processor in the tray with their pin 1 indicators aligned.
  • Page 35 2. Remove the protective film at the bottom of the heatsink if any. To avoid damaging the fins of the heatsink, always grip the heatsink along the ● axis of the fins. Holding a heatsink along the side might damage its fins or solder. 3.
  • Page 36 6. Remove the socket cover by squeezing the finger grips in, then flip 4 anti- tilt wires on the heatsink to the unlocked position (inward) and place the PHM on top of the bolster plate with the Pin 1 indicators aligned. Hold the PHM horizontally, carefully lower down to engage PHM to bolster the plate’...
  • Page 37 8. Tighten all heatsink nuts using a Torx T30 screwdriver in a diagonal sequence to secure the PHM to the motherboard. To ensure even pressure on the CPU, first loosely fasten all four screws, then ● gradually tighten them. Torque: 0.904 N·m (+/-10 %) *0.904 N·m...

  • Page 38: Memory Slots

    Memory Slots P0_DIM_A1/A2~H1/H2, P1_DIM_A1/A2~H1/H2: DDR5 DIMM Slots P0_DIM_H1 Channel H P0_DIM_H2 P0_DIM_G1 Channel G P0_DIM_G2 P0_DIM_F1 Channel F P0_DIM_F2 P0_DIM_E1 Channel E P0_DIM_E2 CPU0 P0_DIM_A2 Channel A P0_DIM_A1 P0_DIM_B2 Channel B P0_DIM_B1 P0_DIM_C2 Channel C P0_DIM_C1 P0_DIM_D2 Channel D P0_DIM_D1 P1_DIM_H1 Channel H P1_DIM_H2...

  • Page 39: Recommended Memory Population

    Recommended Memory Population Please read the following Guidelines before populating memory. ⚠ General Memory Population Rules ● Single DIMM Type Usage: Only one type of DIMM is allowed across the system. Mixing different DIMM types is not permitted. - Example: All DDR5 RDIMMs or all MRDIMMs. ●...
  • Page 40 DIMMs Population (x4/x8) Intel® Xeon® 6700E Series DIMM population within IMC DDR Type Config Set A (x8) Config Set B (x4) Slot 1, Slot 2 Slot 1, Slot 2 x8, None x4, None RDIMM x4, x4 Intel® Xeon® 6700P/ 6500P Series DIMM population within IMC Config Set A (x8) Config Set B (x4)
  • Page 41 Key Parameters for DIMM Intel® Xeon® 6700E Series Speed (MT/s); Voltage (V); DIMM Capacity (GB) Ranks & DIMMs per Channel (DPC) DDR Type DIMM DRAM Density 1DPC 2DPC & Data Width 16 Gb 24 Gb 32 Gb 1.1 V 1DPC 2DPC 1DPC 2DPC...

  • Page 42: Dimm Configuration

    DIMM Configuration Intel® Xeon® 6700E Series Slot 1 Slot 2 Slots DIMMs DRAM DIMM Memory DIMM DIMM DIMM DIMM Density Type Channel Channel Organization Channels Ranks & Capacity Ranks & Capacity (Gb) (SPC) (DPC) Width (GB) Width (GB) 2Rx8 32 GB 1 or 2 1Rx4 32 GB...
  • Page 43 DDR5 Only DIMM Configuration Diagram IMC7 IMC6 IMC5 IMC4 IMC0 IMC1 IMC2 IMC3 IMC# IMC7 IMC6 IMC5 IMC4 IMC0 IMC1 IMC2 IMC3 Channel Chan 7 Chan 6 Chan 5 Chan 4 Chan 0 Chan 1 Chan 2 Chan 3 DDR5 H1 H2 G1 G2 B2 B1 C2 C1 D2 D1 “V”...

  • Page 44: Installing Memory Modules

    Installing Memory Modules 1. Open the side clips to unlock the DIMM slot. 2. Insert the DIMM vertically into the slot, ensuring that the off-center notch at the bottom aligns with the slot. 3. Push the DIMM firmly into the slot until it clicks and the side clips automatically close.

  • Page 45: M.2 Ssd

    M.2 SSD Installing M.2 SSD 1. Adjust the M.2 board latch to fit your M.2 SSD size. Turn the M.2 board latch ● counterclockwise to release, and clockwise to lock. 2. Insert your M.2 SSD into the M.2 slot at a 15-degree angle.

  • Page 46: Pcie Add-In Card

    PCIe Add-in Card Installing PCIe Add-in Card 1. Disconnect all cables from the PCIe switch board and CEM riser cables on the motherboard, then remove the board from the system. 2. Unscrew the rear-side screw and slide out the PCIe tray by pressing the release switch. 3.
  • Page 47 4. Insert the PCIe card into the connector and secure with fixing panel and screw. 5. Reattach the PCIe bracket and and press down firmly until it clicks — the auto- lock plunger will engage. 6. Reinstall the PCIe assembly into the chassis. 7.

  • Page 48: Gpu Card

    GPU Card Important ⚠ Before installing the GPU card, make sure the PCIe add-in card is already installed, as the GPU’ s PCIe switch board must be removed during add-in card installation. Installing GPU Card 1. Loosen the screws on the riser bracket to remove the filler panels. 2.

  • Page 49: Nic Card

    NIC Card Installing NIC Card 1. Loosen the screws on the riser bracket to remove the filler panels. 2. Align the NIC card with the connector, and insert it until it is fully seated. 3. Tighten the screws to securely fix the card in place.

  • Page 50: Power Supply Unit

    Power Supply Unit The server system supports four power supplies that can be easily inserted and removed from the rear side of the system without the need for tools. Important ⚠ Power supplies must be identical and power cords should be connected. ●...

  • Page 51: System Cable Routing

    System Cable Routing Power Cables PCIe bay PCIe bay (middle) (left) for GPUs...

  • Page 52: Pcie Cables

    PCIe Cables PCIe Cables (1) : Motherboard to PCIe Switch Board MCIO 8i 4*pin power PCIe Bay’ s CEM Riser Cables PCIe bay PCIe bay (middle) (left) PCIe Switch Board Motherboard...
  • Page 53 PCIe Cables (2) : E1.S Backplanes to Motherboard & PCIe Switch Board PCIe Switch Board Motherboard E1.S Backplanes...

  • Page 54: Slide Rail

    Slide Rail This section provides instructions for installing slide rails on your server rack to mount the server. Proper installation ensures safe and stable operation of the equipment. Follow the steps below carefully to avoid injury or damage. Prerequisites ● Rack Space: Ensure sufficient rack units (RU) are available for the server and slide rails. ●...

  • Page 55: Installing And Removing The Slide Rail

    Installing and Removing the Slide Rail U9DJ-700 1-1) Remove the inner rail. 1-2) Rotate (a) and slide middle rail back. ➌ inner rail ➋ Press on the disconnect ⒜ Click! tab to remove the rail. ➋ ➊ outer rail White Push Pull ➍...
  • Page 56 MSI.COM EPS.MSI.COM...

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