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Supero 6047R-E1CR36N User Manual

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YSTEM
6047R-E1CR36N
USER'S MANUAL
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Summary of Contents for Supero 6047R-E1CR36N

  • Page 1 UPER ® UPER TORAGE YSTEM 6047R-E1CR36N USER’S MANUAL...
  • Page 2 The information in this User’s Manual has been carefully reviewed and is believed to be accurate. The vendor assumes no responsibility for any inaccuracies that may be contained in this document, makes no commitment to update or to keep current the information in this manual, or to notify any person or organization of the updates.
  • Page 3 SC847BE1C-R1K28LPB chassis. Chapter 2: Server Installation This chapter describes the steps necessary to install the 6047R-E1CR36N into a rack and check out the server configuration prior to powering up the system. If your server was ordered without processor and memory components, this chapter will refer you to the appropriate sections of the manual for their installation.
  • Page 4 UPER TORAGE YSTEM 6047R-E1CR36N User's Manual Chapter 5: Advanced Serverboard Setup Chapter 5 provides detailed information on the X9DRi-LN4F+ serverboard, includ- ing the locations and functions of connections, headers and jumpers. Refer to this chapter when adding or removing processors or main memory and when reconfig- uring the serverboard.
  • Page 5 Preface Notes...

  • Page 6: Table Of Contents

    UPER TORAGE YSTEM 6047R-E1CR36N User's Manual Table of Contents Chapter 1 Introduction Overview ......................1-1 Serverboard Features ..................1-2 Processors ...................... 1-2 Memory ......................1-2 Main Storage Controller .................. 1-2 Serial ATA ......................1-2 PCI Expansion Slots ..................1-2 Rear I/O Ports ....................1-3 Server Chassis Features ................
  • Page 7 Table of Contents Power Fail ....................... 3-2 Overheat/Fan Fail ................... 3-2 NIC1 ........................ 3-2 NIC2 ........................ 3-3 HDD ......................... 3-3 Power ......................3-3 Drive Carrier LEDs ..................3-3 Chapter 4 Standardized Warning Statements for AC Systems About Standardized Warning Statements ............4-1 Warning Definition ...................
  • Page 8 UPER TORAGE YSTEM 6047R-E1CR36N User's Manual Serverboard Details ..................5-13 X9DRi-LN4F+ Quick Reference ..............5-14 Connector Definitions ................... 5-16 Jumper Settings .................... 5-23 5-10 Onboard Indicators ..................5-27 5-11 SATA Ports ....................5-28 5-12 Installing Software ..................5-29 SuperDoctor III ....................5-30 5-13 Onboard Battery ....................

  • Page 9: Chapter 1 Introduction

    Chapter 1 Introduction Overview The 6047R-E1CR36N is a high-end storage system comprised of two main subsys- tems: the SC847BE1C-R1K28LPB 4U/rack mount chassis and the X9DRi-LN4F+ dual processor serverboard. Please refer to our web site for information on operating systems that have been certified for use with the system (www.supermicro.com).

  • Page 10: Serverboard Features

    YSTEM 6047R-E1CR36N User's Manual Serverboard Features The 6047R-E1CR36N is built around the X9DRi-LN4F+, a dual processor serverboard based on the Intel C600 chipset and designed to provide maximum performance. Below are the main features of the X9DRi-LN4F+. (See Figure 1-1 for a block diagram of the chipset).

  • Page 11: Rear I/O Ports

    Chapter 1: Introduction Rear I/O Ports The color-coded I/O ports include one COM port, a VGA port, four USB 2.0 ports (additional USB headers are included on the serverboard), four gigabit Ethernet ports and two external MiniSAS HD expansion ports. A dedicated IPMI LAN port is also included.
  • Page 12 UPER TORAGE YSTEM 6047R-E1CR36N User's Manual Figure 1-1. Intel C600 Chipset: System Block Diagram Note: This is a general block diagram. Please see Chapter 5 for details. CPU REAR Socket 2 PROCESSOR CPU FRONT Socket 1 PROCESSOR SYSTEM BIOS SATA x4 [7.4]...
  • Page 13 JTPM1 JPME2 IPMB Note: The SSG-6047R-E1CR36N comes pre-installed with a Hardware RAID controller installed in PCI-E slot 1 and a JBOD expansion port installed in PCI-E slot 2. Serverboard SAS components shown in the figure above are not included on the X9DRi-LN4F+...

  • Page 14: Contacting Supermicro

    UPER TORAGE YSTEM 6047R-E1CR36N User's Manual Contacting Supermicro Headquarters Address: Super Micro Computer, Inc. 980 Rock Ave. San Jose, CA 95131 U.S.A. Tel: +1 (408) 503-8000 Fax: +1 (408) 503-8008 Email: marketing@supermicro.com (General Information) support@supermicro.com (Technical Support) Website: www.supermicro.com Europe Address: Super Micro Computer B.V.

  • Page 15: Chapter 2 Server Installation

    Unpacking the System You should inspect the box the SuperServer 6047R-E1CR36N was shipped in and note if it was damaged in any way. If the server itself shows damage you should file a damage claim with the carrier who delivered it.

  • Page 16: Warnings And Precautions

    UPER TORAGE YSTEM 6047R-E1CR36N User's Manual • This product is for installation only in a Restricted Access Location (dedicated equipment rooms, service closets and the like). • This product is not suitable for use with visual display work place devices acccording to §2 of the the German Ordinance for Work with Visual Display Units.

  • Page 17: Rack Mounting Considerations

    Chapter 2: Server Installation Rack Mounting Considerations Ambient Operating Temperature If installed in a closed or multi-unit rack assembly, the ambient operating tempera- ture of the rack environment may be greater than the room's ambient temperature. Therefore, consideration should be given to installing the equipment in an environ- ment compatible with the manufacturer’s maximum rated ambient temperature (Tmra).

  • Page 18: Rack Mounting Instructions

    UPER TORAGE YSTEM 6047R-E1CR36N User's Manual Rack Mounting Instructions This section provides information on installing the chassis into a rack unit with the rails provided. There are a variety of rack units on the market, which may mean that the assembly procedure will differ slightly from the instructions provided. You should also refer to the installation instructions that came with the rack unit you are using.

  • Page 19: Locking Tabs

    Chapter 2: Server Installation 3. Secure the rail to the chassis with four screws as illustrated. 4. Repeat steps 1-3 for the other inner rack rail. Locking Tabs Each inner rail has a locking tab. This tab locks the chassis into place when installed and pushed fully into the rack.

  • Page 20: Installing The Inner Rails On The Chassis

    4. Secure the inner rail to the chassis with the screws provided. 5. Repeat steps 1 through 4 above for the other inner rail. Note: chassis pictured may vary slightly from the 6047R-E1CR36N system chassis. Warning: When initially installing the server to a rack, test that the rail locking tabs engage to prevent the server from being overextended.

  • Page 21: Installing The Outer Rails On The Rack

    Chapter 2: Server Installation L-min=676.00(26.61")(outer rail) 21D01 Figure 2-4. Extending and Releasing the Outer Rails Installing the Outer Rails on the Rack Installing the Outer Rails 1. Press upward on the locking tab at the rear end of the middle rail. 2.
  • Page 22 UPER TORAGE YSTEM 6047R-E1CR36N User's Manual Figure 2-5. Installing into a Rack Notes: figures are for illustrative purposes only. Always install servers into racks from the bottom up. The chassis pictured may vary slightly from the 6047R- E1CR36N system chassis.

  • Page 23: Chapter 3 System Interface

    Chapter 3: System Interface Chapter 3 System Interface Overview There are several LEDs on the control panel as well as others on the drive carri- ers to keep you constantly informed of the overall status of the system as well as the activity and health of specific components.

  • Page 24: Control Panel Leds

    UPER TORAGE YSTEM 6047R-E1CR36N User's Manual Control Panel LEDs The control panel located on the front of the chassis has several LEDs. These LEDs provide you with critical information related to different parts of the system. This section explains what each LED indicates when illuminated and any corrective action you may need to take.

  • Page 25: Nic2

    Chapter 3: System Interface NIC2 Indicates network activity on the LAN2 port when flashing. Indicates IDE channel activity. On the SuperServer 6047R-E1CR36N, this LED indicates hard and/or DVD-ROM drive activity when flashing. Power Indicates power is being supplied to the system's power supply units. This LED should normally be illuminated when the system is operating.
  • Page 26 UPER TORAGE YSTEM 6047R-E1CR36N User's Manual Notes...

  • Page 27: About Standardized Warning Statements

    Chapter 4: Warning Statements for AC Systems Chapter 4 Standardized Warning Statements for AC Systems About Standardized Warning Statements The following statements are industry standard warnings, provided to warn the user of situations which have the potential for bodily injury. Should you have questions or experience difficulty, contact Supermicro's Technical Support department for assistance.
  • Page 28 UPER TORAGE YSTEM 6047R-E1CR36N User's Manual Warnung WICHTIGE SICHERHEITSHINWEISE Dieses Warnsymbol bedeutet Gefahr. Sie befinden sich in einer Situation, die zu Verletzungen führen kann. Machen Sie sich vor der Arbeit mit Geräten mit den Gefahren elektrischer Schaltungen und den üblichen Verfahren zur Vorbeugung vor Unfällen vertraut.
  • Page 29 Warning Statements for AC Systems ‫جسذٌة‬ ‫اصابة‬ ً‫تتسبب ف‬ ‫حالة ٌوكي أى‬ ً‫اًك ف‬ ‫خطز‬ ًٌ‫ٌع‬ ‫هذا الزهز‬ !‫تحذٌز‬ ‫الذوائز‬ ‫بالوخاطز الٌاجوة عي‬ ‫ي على علن‬ ، ‫ك‬ ‫هعذات‬ ‫تعول على أي‬ ‫قبل أى‬ ‫الكهزبائٍة‬ ‫حىادث‬ ‫أي‬ ‫وقىع‬ ‫وٌع‬ ‫ل‬ ‫الىقائٍة‬...

  • Page 30: Installation Instructions

    UPER TORAGE YSTEM 6047R-E1CR36N User's Manual Installation Instructions Warning! Read the installation instructions before connecting the system to the power source. 設置手順書 システムを電源に接続する前に、 設置手順書をお読み下さい。 警告 将此系统连接电源前,请先阅读安装说明。 警告 將系統與電源連接前，請先閱讀安裝說明。 Warnung Vor dem Anschließen des Systems an die Stromquelle die Installationsanweisungen lesen.

  • Page 31: Circuit Breaker

    Chapter 4: Warning Statements for AC Systems Circuit Breaker Warning! This product relies on the building's installation for short-circuit (overcurrent) protection. Ensure that the protective device is rated not greater than: 250 V, 20 A. サーキッ ト ・ ブレーカー この製品は、 短絡 （過電流） 保護装置がある建物での設置を前提としています。 保護装置の定格が250 V、...

  • Page 32: Power Disconnection Warning

    UPER TORAGE YSTEM 6047R-E1CR36N User's Manual 경고! 이 제품은 전원의 단락(과전류)방지에 대해서 전적으로 건물의 관련 설비에 의존합니다. 보호장치의 정격이 반드시 250V(볼트), 20A(암페어)를 초과하지 않도록 해야 합니다. Waarschuwing Dit product is afhankelijk van de kortsluitbeveiliging (overspanning) van uw electrische installatie. Controleer of het beveiligde aparaat niet groter gedimensioneerd is dan 220V, 20A.
  • Page 33 Chapter 4: Warning Statements for AC Systems ¡Advertencia! El sistema debe ser disconnected de todas las fuentes de energía y del cable eléctrico quitado de los módulos de fuente de alimentación antes de tener acceso el interior del chasis para instalar o para quitar componentes de sistema. Attention Le système doit être débranché...

  • Page 34: Equipment Installation

    UPER TORAGE YSTEM 6047R-E1CR36N User's Manual Equipment Installation Warning! Only trained and qualified personnel should be allowed to install, replace, or service this equipment. 機器の設置 トレーニングを受け認定された人だけがこの装置の設置、 交換、 またはサービスを許可 されています。 警告 只有经过培训且具有资格的人员才能进行此设备的安装、更换和维修。 警告 只有經過受訓且具資格人員才可安裝、更換與維修此設備。 Warnung Das Installieren, Ersetzen oder Bedienen dieser Ausrüstung sollte nur geschultem, qualifiziertem Personal gestattet werden.

  • Page 35: Restricted Area

    Chapter 4: Warning Statements for AC Systems Waarschuwing Deze apparatuur mag alleen worden geïnstalleerd, vervangen of hersteld door geschoold en gekwalificeerd personeel. Restricted Area Warning! This unit is intended for installation in restricted access areas. A restricted access area can be accessed only through the use of a special tool, lock and key, or other means of security.

  • Page 36: Battery Handling

    UPER TORAGE YSTEM 6047R-E1CR36N User's Manual ‫אזור עם גישה מוגבלת‬ !‫אזהרה‬ ‫יש להתקין את היחידה באזורים שיש בהם הגבלת גישה. הגישה ניתנת בעזרת‬ .)'‫כלי אבטחה בלבד (מפתח, מנעול וכד‬ ‫محظورة‬ ‫مناطق‬ ٍ‫نتركُبها ف‬ ‫هذه انىحذة‬ ‫تخصيص‬ ‫تم‬ ،‫أداة خاصت‬ ‫من خالل استخذاو‬...
  • Page 37 Chapter 4: Warning Statements for AC Systems Warnung Bei Einsetzen einer falschen Batterie besteht Explosionsgefahr. Ersetzen Sie die Batterie nur durch den gleichen oder vom Hersteller empfohlenen Batterietyp. Entsorgen Sie die benutzten Batterien nach den Anweisungen des Herstellers. Attention Danger d'explosion si la pile n'est pas remplacée correctement. Ne la remplacer que par une pile de type semblable ou équivalent, recommandée par le fabricant.

  • Page 38: Redundant Power Supplies

    UPER TORAGE YSTEM 6047R-E1CR36N User's Manual Redundant Power Supplies Warning! This unit might have more than one power supply connection. All connections must be removed to de-energize the unit. 冗長電源装置 このユニッ トは複数の電源装置が接続されている場合があります。 ユニッ トの電源を切るためには、 すべての接続を取り外さなければなりません。 警告 此部件连接的电源可能不止一个，必须将所有电源断开才能停止给该部件供电。 警告 此裝置連接的電源可能不只一個，必須切斷所有電源才能停止對該裝置的供電。 Warnung Dieses Gerät kann mehr als eine Stromzufuhr haben.

  • Page 39: Backplane Voltage

    Chapter 4: Warning Statements for AC Systems ‫امداد الطاقة‬ ‫بوحدات‬ ‫عدة اتصاالت‬ ‫جهاز‬ ‫ال‬ ‫يكون لهذا‬ ‫قد‬ ‫الكهرباء‬ ‫عن‬ ‫وحدة‬ ‫ال‬ ‫لعسل‬ ‫كافة االتصاالت‬ ‫يجب إزالة‬ 경고! 이 장치에는 한 개 이상의 전원 공급 단자가 연결되어 있을 수 있습니다. 이 장치에 전원을...

  • Page 40: Comply With Local And National Electrical Codes

    UPER TORAGE YSTEM 6047R-E1CR36N User's Manual ‫מתח בפנל האחורי‬ !‫הרה‬ ‫אז‬ ‫קיימת סכנת מתח בפנל האחורי בזמן תפעול המערכת. יש להיזהר במהלך‬ .‫העבודה‬ ‫اللىحة‬ ‫أوالطاقة المىجىدة على‬ ‫التيار الكهزبائي‬ ‫مه‬ ‫خطز‬ ‫هناك‬ ‫هذا الجهاس‬ ‫خدمة‬ ‫كه حذرا عند‬ ‫يعمل‬ ‫النظام‬...

  • Page 41: Product Disposal

    Chapter 4: Warning Statements for AC Systems Attention L'équipement doit être installé conformément aux normes électriques nationales et locales. ‫תיאום חוקי החשמל הארצי‬ !‫אזהרה‬ ‫הציוד חייבת להיות תואמת לחוקי החשמל המקומיים והארציים‬ ‫התקנת‬ ‫المتعلقة‬ ‫المحلية والىطىية‬ ‫قىاويه‬ ‫يجب أن يمتثل لل‬ ‫الكهربائية‬...

  • Page 42: Hot Swap Fan Warning

    UPER TORAGE YSTEM 6047R-E1CR36N User's Manual ¡Advertencia! Al deshacerse por completo de este producto debe seguir todas las leyes y reglamentos nacionales. Attention La mise au rebut ou le recyclage de ce produit sont généralement soumis à des lois et/ou directives de respect de l'environnement. Renseignez-vous auprès de l'organisme compétent.
  • Page 43 Chapter 4: Warning Statements for AC Systems 警告 當您從機架移除風扇裝置，風扇可能仍在轉動。小心不要將手指、螺絲起子和其他 物品太靠近風扇。 Warnung Die Lüfter drehen sich u. U. noch, wenn die Lüfterbaugruppe aus dem Chassis genommen wird. Halten Sie Finger, Schraubendreher und andere Gegenstände von den Öffnungen des Lüftergehäuses entfernt. ¡Advertencia! Los ventiladores podran dar vuelta cuando usted quite ell montaje del ventilador del chasis.

  • Page 44: Power Cable And Ac Adapter

    UPER TORAGE YSTEM 6047R-E1CR36N User's Manual Power Cable and AC Adapter Warning! When installing the product, use the provided or designated connection cables, power cables and AC adaptors. Using any other cables and adaptors could cause a malfunction or a fire. Electrical Appliance and Material Safety Law prohibits the use of UL or CSA -certified cables (that have UL/CSA shown on the code) for any other electrical devices than products designated by Supermicro only.
  • Page 45 Chapter 4: Warning Statements for AC Systems Attention Lors de l'installation du produit, utilisez les bables de connection fournis ou désigné. L'utilisation d'autres cables et adaptateurs peut provoquer un dysfonctionnement ou un incendie. Appareils électroménagers et de loi sur la sécurité Matériel interdit l'utilisation de UL ou CSA câbles certifiés qui ont UL ou CSA indiqué...
  • Page 46 UPER TORAGE YSTEM 6047R-E1CR36N User's Manual Notes 4-20...

  • Page 47: Chapter 5 Advanced Serverboard Setup

    Chapter 5: Advanced Serverboard Setup Chapter 5 Advanced Serverboard Setup This chapter covers the steps required to install the X9DRi-LN4F+ serverboard into the chassis, connect the data and power cables and install add-on cards. All serverboard jumpers and connections are also described. A layout and quick refer- ence chart are included in this chapter for your reference.

  • Page 48: Unpacking

    UPER TORAGE YSTEM 6047R-E1CR36N User's Manual Unpacking The serverboard is shipped in antistatic packaging to avoid electrical static dis- charge. When unpacking the board, make sure the person handling it is static protected. Connecting Cables Several cables need to be connected to the serverboard. These include the data cables for the peripherals and control panel and the power cables.

  • Page 49: Rear I/O Ports

    Chapter 5: Advanced Serverboard Setup Figure 5-1. Control Panel Header Pins Ground x (Key) x (Key) Power On LED 3.3V HDD LED ID/UID/SW/3.3V Stby NIC1 Link LED NIC1 Activity LED NIC2 Link LED NIC2 Activity LED OH/Fan Fail LED Red + (Blue Cathode Power Fail LED 3.3V Ground...

  • Page 50: Installing The Processor And Heatsink

    UPER TORAGE YSTEM 6047R-E1CR36N User's Manual Installing the Processor and Heatsink Warning: When handling the processor package, avoid placing direct pressure on the label area of the fan. Notes: • Always connect the power cord last and always remove it before adding, re- moving or changing any hardware components.
  • Page 51 Chapter 5: Advanced Serverboard Setup 3. With the lever labeled 'Close 1st' fully retracted, gently push down on the 'Open 1st' lever to open the load plate. Lift the load plate to open it completely. Gently push 4. Using your thumb and the index down to pop the load plate finger, remove the 'WARNING'...
  • Page 52 UPER TORAGE YSTEM 6047R-E1CR36N User's Manual Warning: You can only install the CPU to the socket in one direction. Make sure that the CPU is properly inserted into the socket before closing the load plate. If it doesn't close properly, do not force it as it may damage your CPU. Instead, open the load plate again and double-check that the CPU is aligned properly.

  • Page 53: Installing A Passive Cpu Heatsink

    Chapter 5: Advanced Serverboard Setup Installing a Passive CPU Heatsink 1. Do not apply any thermal grease to the heatsink or the CPU die - the required amount has already been applied. 2. Place the heatsink on top of the CPU so that the four mounting holes are aligned with those on the serverboard and the heatsink bracket underneath.

  • Page 54: Removing The Heatsink

    UPER TORAGE YSTEM 6047R-E1CR36N User's Manual Removing the Heatsink Warning: We do not recommend that the CPU or the heatsink be removed. However, if you do need to uninstall the heatsink, please follow the instructions below to uninstall the heatsink to prevent damage done to the CPU or the CPU socket.

  • Page 55: Installing Memory

    Chapter 5: Advanced Serverboard Setup Installing Memory Warning: Exercise extreme care when installing or removing DIMM modules to prevent any possible damage. Memory Support The X9DRi-LN4F+ supports up to 1.5 TB of Load Reduced (LRDIMM), 768 GB of reg- istered (RDIMM) or 128 GB of unbuffered (UDIMM) DDR3-1866/1600/1333/1066/800 memory.
  • Page 56 UPER TORAGE YSTEM 6047R-E1CR36N User's Manual DIMM Module Population Tables Processors and their Corresponding Memory Slots CPU# Corresponding Memory Slot CPU 1 (P1-) CPU2 (P2-) Processor and Memory Module Population Number of CPU and Memory Population Configuration Table CPUs+DIMMs (For memory to work properly, please install DIMMs as shown below.) 1 CPU &...
  • Page 57 Chapter 5: Advanced Serverboard Setup 1 CPU, 3 DIMMs 1 CPU, 6 DIMMs 1 CPU, 9 DIMMs 1 CPU, 12 DIMMs 2 CPU, 6 DIMMs 2 CPU, 12 DIMMs 2 CPU, 16 DIMMs 2 CPU, 18 DIMMs For two CPUs and 24 DIMMs, populate all DIMM slots. 5-11...

  • Page 58: Adding Pci Add-On Cards

    TORAGE YSTEM 6047R-E1CR36N User's Manual Adding PCI Add-On Cards The 6047R-E1CR36N can accommodate up to three PCI-E x16 and one PCI-E x8 low-profile expansion (add-on) cards. Installing an Add-on Card 1. Begin by removing the shield for the PCI slot you wish to populate.

  • Page 59: Serverboard Details

    Jumpers not indicated are for test purposes only and should not have their settings changed. The SSG-6047R-E1CR36N comes pre-installed with a Hardware RAID control- ler installed in PCI-E slot 1 and a JBOD expansion port installed in PCI-E slot 2.

  • Page 60: X9Dri-Ln4F+ Quick Reference

    UPER TORAGE YSTEM 6047R-E1CR36N User's Manual X9DRi-LN4F+ Quick Reference Jumper Description Default Setting JBT1 Clear CMOS See Section 5-9 C1/JI SMB to PCI-E Slots Pins 2-3 (Normal) XDP (Extended Debug Port) Open (Disabled) JPB1 BMC Enable/Disbable Pins 1-2 (Enabled) JPG1...
  • Page 61 Chapter 5: Advanced Serverboard Setup (IPMI) LAN Dedicated IPMI LAN Onboard Buzzer (Internal Speaker) USB 0/1 Back Panel USB 0/1 USB 2/3 Back Panel USB 2/3 USB 4/5, USB 6/7 Front Panel Accessible USB Connections 4/5, 6/7 USB 9 Front Panel Type A USB 6, USB 7 Ports UID Switch UID (Unit Identifier) Switch Backpanel VGA Port...

  • Page 62: Connector Definitions

    UPER TORAGE YSTEM 6047R-E1CR36N User's Manual Connector Definitions ATX Power 24-pin Connector Pin Definitions Pin# Definition Pin # Definition Power Connectors +3.3V +3.3V -12V +3.3V A 24-pin main power supply connec- tor (JPW1) and two 8-pin CPU power PS_ON connectors (JPW2/3) must be con- nected to the power supply.
  • Page 63 Chapter 5: Advanced Serverboard Setup Power Fail LED PWR Fail LED The Power Fail LED connection is Pin Definitions (JF1) located on pins 5 and 6 of JF1. Re- Pin# Definition fer to the table on the right for pin definitions.
  • Page 64 UPER TORAGE YSTEM 6047R-E1CR36N User's Manual Power On LED Power LED Pin Definitions (JF1) The Power On LED connector is lo- Pin# Definition cated on pins 15 and 16 of JF1 (use 5V Stby JLED for a 3-pin connector). This...
  • Page 65 Chapter 5: Advanced Serverboard Setup Chassis Intrusion Chassis Intrusion Pin Definitions The Chassis Intrusion header is des- Pin# Definition ignated JL1. Attach an appropriate Intrusion Input cable from the chassis to inform you Ground of a chassis intrusion when the chas- sis is opened Ethernet Ports Four Ethernet ports are located on the...
  • Page 66 UPER TORAGE YSTEM 6047R-E1CR36N User's Manual Serial Port Pin Definitions Serial Ports (COM1/COM2) Pin # Definition Pin # Definition Two serial ports are included on the serverboard. COM1 is a backpanel port and COM2 is a header located near the PCI-E slot 1. See the table on the right for pin definitions.
  • Page 67 Chapter 5: Advanced Serverboard Setup IPMB Header IPMB Pin Definitions A System Management Bus header Pin# Definition for IPMI 2.0 is located at IPMB. Con- Data nect the appropriate cable here to Ground use the IPMB I C connection on your Clock system.
  • Page 68 UPER TORAGE YSTEM 6047R-E1CR36N User's Manual Unit Identifier Switch UID Switch The UID Switch is located next to the Pin# Definition LAN 2/4 ports on the backplane. The Ground Rear UID LED (LE2) is located next Ground to the UID switch. The control panel...

  • Page 69: Jumper Settings

    Chapter 5: Advanced Serverboard Setup Jumper Settings Explanation of Jumpers To modify the operation of the serverboard, jumpers can be used Connector to choose between optional settings. Pins Jumpers create shorts between two pins to change the function of the con- nector.
  • Page 70 UPER TORAGE YSTEM 6047R-E1CR36N User's Manual GLAN Enable/Disable GLAN Enable JPL1 enables or disables the GLAN Jumper Settings por ts on the ser verboard. See Jumper Setting Definition the table on the right for jumper Pins 1-2 Enabled settings. The default setting is...
  • Page 71 Chapter 5: Advanced Serverboard Setup Manufacturer's Mode Jumper JPME2 allows the user to ME Mode Select Jumper Settings flash the system firmware from a Jumper Setting Definition host server in order to modify system Pins 1-2 Normal settings. Close this jumper to bypass Pins 2-3 Manufacture's Mode SPI flash security, and force ME into...
  • Page 72 UPER TORAGE YSTEM 6047R-E1CR36N User's Manual Watch Dog Enable/Disable Jumper JWD controls the Watch Dog function. Watch Dog is a sys- tem monitor that can reboot the system when a software application hangs. Jumping pins 1-2 will cause Watch Dog...

  • Page 73: 5-10 Onboard Indicators

    X8DT3/i-F/-LN4F Chapter 5: Advanced Serverboard Setup X8DT3-LN4/LN4F 5-10 Onboard Indicators LAN LEDs The Ethernet ports (located beside the JLAN1/2 LED VGA port) have two LEDs. On each (Connection Speed Indicator) port, the yellow LED flashes to indi- LED Color Definition cate activity while the other LED may NC or 10 Mbps be green, amber or off to indicate the...

  • Page 74: 5-11 Sata Ports

    UPER TORAGE YSTEM 6047R-E1CR36N User's Manual 5-11 SATA Ports Serial ATA Ports SATA Port There are six Serial ATA Ports (I- Pin Definitions SATA0~I-SATA 5) located on the Pin# Definition Definition serverboard, including four SATA2 Ground ports and two SATA3 ports. These...

  • Page 75: 5-12 Installing Software

    Chapter 5: Advanced Serverboard Setup 5-12 Installing Software The Supermicro ftp site contains drivers and utilities for your system at ftp://ftp. supermicro.com. Some of these must be installed, such as the chipset driver. After accessing the ftp site, go into the CDR_Images directory and locate the ISO file for your serverboard.

  • Page 76: Superdoctor Iii

    UPER TORAGE YSTEM 6047R-E1CR36N User's Manual SuperDoctor III The SuperDoctor® III program is a web-based management tool that supports remote management capability. It includes Remote and Local Management tools. The local management is called SD III Client. The SuperDoctor III program allows you to monitor the environment and operations of your system.
  • Page 77 Chapter 5: Advanced Serverboard Setup Figure 5-7. SuperDoctor III Interface Display Screen (Remote Control) Note: The SuperDoctor III program and User’s Manual can be downloaded from the Supermicro web site at http://www.supermicro.com/products/accessories/soft- ware/SuperDoctorIII.cfm. For Linux, we recommend that you use the SuperDoctor II application instead.

  • Page 78: 5-13 Onboard Battery

    UPER TORAGE YSTEM 6047R-E1CR36N User's Manual 5-13 Onboard Battery Please handle used batteries carefully. Do not damage the battery in any way; a damaged battery may release hazardous materials into the environment. Do not discard a used battery in the garbage or a public landfill. Please comply with the regulations set up by your local hazardous waste management agency to dispose of your used battery properly.

  • Page 79: Chapter 6 Advanced Chassis Setup

    Chapter 6: Advanced Chassis Setup Chapter 6 Advanced Chassis Setup This chapter covers the steps required to install components and perform mainte- nance on the SC847BE1C-R1K28LPB chassis. For component installation, follow the steps in the order given to eliminate the most common problems encountered. If some steps are unnecessary, skip ahead to the step that follows.

  • Page 80: Control Panel

    UPER TORAGE YSTEM 6047R-E1CR36N User's Manual Figure 6-1. Front and Rear Chassis Views Control Panel Hard Drives (24) Power Supplies (2) Hardware RAID Add-on Card and JBOD Expansion Ports I/O Ports Hard Drives (12) Control Panel The control panel (located on the front of the chassis) must be connected to the JF1 connector on the serverboard to provide you with system status indications.

  • Page 81: Removing The Chassis Cover

    Chapter 6: Advanced Chassis Setup Removing the Chassis Cover Figure 6-2. Removing the Chassis Cover Removing the Chassis Cover 1. Unplug the chassis from any power source 2. Remove the screws securing the cover to the chassis. 3. Lift the cover up and off the chassis. Warning: Except for short periods of time, do NOT operate the server without the cover in place.

  • Page 82: System Fans

    Seven 8-cm hot-swap chassis fans provide redundant cooling for the SuperServer 6047R-E1CR36N. It is very important that the chassis top cover is properly installed and making a good seal in order for the cooling air to circulate properly through the chassis and cool the components.

  • Page 83: Drive Bay Installation/Removal

    SAS/SATA Drives: You do not need to access the inside of the chassis or remove power to replace or swap SATA drives. Proceed to the next step for instructions. Note: You must use standard 1" high, drives in the SuperServer 6047R-E1CR36N. Note: Use caution when working around the backplane. Do not touch the backplane with any metal objects and make sure no ribbon cables touch the backplane or obstruct the holes, which aid in proper airflow.

  • Page 84: Hard Drive Installation

    UPER TORAGE YSTEM 6047R-E1CR36N User's Manual Hard Drive Installation Mounting a Hard Drive in a Drive Carrier The SAS/SATA drives are mounted in drive carriers to simplify their installation and removal from the chassis. These carriers also help promote proper airflow for the drives.

  • Page 85: Hard Drive Backplane

    Chapter 6: Advanced Chassis Setup Figure 6-4. Mounting a Drive in a Carrier Figure 6-5. Installing a Drive Carrier Hard Drive Backplane The hard drives plug into a backplane that provides power, drive ID and bus ter- mination. The supplied RAID controller provides hot-swap capability with SAS/ SATA drive state indication.

  • Page 86: Removing The Air Shroud

    UPER TORAGE YSTEM 6047R-E1CR36N User's Manual Removing the Air Shroud Under most circumstances you will not need to remove the air shroud to perform any service on the system. However, if you need to temporarily remove it (the air shroud sould always be in place when the system is operating), please follow this procedure.

  • Page 87: Installing Optional Fixed Hard Drives

    Chapter 6: Advanced Chassis Setup Installing Optional Fixed Hard Drives The SC847 chassis includes brackets for installing either one 3.5" fixed hard drive, or two 2.5" fixed hard drives within the chassis. Each chassis can accomodate up to two internal drive trays supporting up to two 3.5" hard drives or up to four 2.5" hard drives.

  • Page 88: Power Supply

    YSTEM 6047R-E1CR36N User's Manual Power Supply The SuperServer 6047R-E1CR36N has an 1280 watt redundant, hot-plug power supply consisting of two power modules. Each power supply module has an auto- switching capability, which enables it to automatically sense and operate at a 100V - 240V input voltage.

  • Page 89: Dc Power

    Attaching a JBOD Expansion Chassis The SSG-6047R-E1CR36N features dual JBOD expansion ports. The figure below illustrates the recommended expansion strategy. The JBOD attachment will vary depending on the specific JBOD chassis that is being connected. Please follow the instructions provided with the JBOD.
  • Page 90 UPER TORAGE YSTEM 6047R-E1CR36N User's Manual Figure 6-8. JBOD Expansion Port JBOD OUT (downstream ports) Note: the use of two cables (8x SAS lanes) is recommended. 6-12...

  • Page 91: Chapter 7 Bios

    Chapter 7: BIOS Chapter 7 BIOS Introduction This chapter describes the AMI BIOS Setup utility for the X9DR6-LN4F+/X9DRi- LN4F+. It also provides the instructions on how to navigate the AMI BIOS Setup utility screens. The AMI ROM BIOS is stored in a Flash EEPROM and can be easily updated.

  • Page 92: Main Setup

    UPER TORAGE YSTEM 6047R-E1CR36N User's Manual Starting the Setup Utility Normally, the only visible Power-On Self-Test (POST) routine is the memory test. As the memory is being tested, press the <F2> key to enter the main menu of the AMI BIOS Setup utility. From the main menu, you can access the other setup screens.

  • Page 93: Advanced Setup Configurations

    Chapter 7: BIOS Supermicro X9DRi-LN4+ (Note: X9DR6-LN4+ images used for reference) SMC Version This item displays the SMC version of the BIOS ROM used in this system. SMC Build Date This item displays the date that the BIOS Setup utility was built. Memory Information Total Memory This displays the amount of memory that is available in the system.
  • Page 94 UPER TORAGE YSTEM 6047R-E1CR36N User's Manual AddOn ROM Display Mode Use this item to set the display mode for the Option ROM. Select Keep Current to use the current AddOn ROM Display setting. Select Force BIOS to use the Option ROM display mode set by the system BIOS.
  • Page 95 Chapter 7: BIOS CPU Configuration This submenu displays the information of the CPU as detected by the BIOS. It also allows the user to configuration CPU settings. Socket 0 CPU Information  This submenu displays the following information regarding the CPU installed in Socket 0.
  • Page 96 UPER TORAGE YSTEM 6047R-E1CR36N User's Manual Clock Spread Spectrum Select Enable to enable Clock Spectrum support, which will allow the BIOS to moni- tor and attempt to reduce the level of Electromagnetic Interference caused by the components whenever needed. The options are Disabled and Enabled.
  • Page 97 Chapter 7: BIOS based on the specifications of the application running in the system at the time. The options are Disabled and Enabled. Intel® Virtualization Technology (Available when supported by the CPU) Select Enabled to support Intel Virtualization Technology, which will allow one platform to run multiple operating systems and applications in independent parti- tions, creating multiple "virtual"...
  • Page 98 UPER TORAGE YSTEM 6047R-E1CR36N User's Manual CPU C3 Report Select Enabled to allow the BIOS to report the CPU C3 State (ACPI C2) to the operating system. During the CPU C3 State, the CPU clock generator is turned off. The options are Enabled and Disabled.
  • Page 99 Chapter 7: BIOS Chipset Configuration North Bridge Configuration This feature allows the user to configure the settings for the Intel North Bridge. Intergraded IO Configuration Intel VT-d Select Enabled to enable Intel Virtualization Technology support for Direct I/O VT-d by reporting the I/O device assignments to the VMM (Virtual Working Memory) through the DMAR ACPI Tables.
  • Page 100 UPER TORAGE YSTEM 6047R-E1CR36N User's Manual Port 1B Link Speed Select GEN1 to enable PCI-Exp Generation 1 support for Port 1B. Select GEN2 to enable PCI-Exp Generation 2 support for Port 1B. Select GEN3 to enable PCI-Exp Generation 3 support for Port 1B. The options are GEN1, GEN2 and GEN3.
  • Page 101 Chapter 7: BIOS Up Tx Preset This feature allows the user to select the preset setting for a upstream component transmitter. The options are P0 (-6.0/0.0 dB), P1 (-3.5/0.0 dB), P2 (-4.5/0.0 dB), P3 (-2.5/0.0 dB), P4 (0.0/0.0 dB), P5 (0.0/-2.0 dB), P6 (0.0/-2.5 dB), P7 (-6.0/-3.5 dB), P8 (-3.5/-3.5 dB), P9 (0.0/-3.5 dB), and Auto.
  • Page 102 UPER TORAGE YSTEM 6047R-E1CR36N User's Manual Isoc Select Enabled to enable Ischronous support to meet QoS (Quality of Service) requirements. This feature is especially important for virtualization technology. The options are Disabled and Enabled. QPI (Quick Path Interconnect) Link Speed Mode Use this feature to select data transfer speed for QPI Link connections.
  • Page 103 Chapter 7: BIOS Memory Mode When Independent is selected, all DIMMs are available to the operating system. When Mirroring is selected, the motherboard maintains two identical copies of all data in memory for data backup. When Lockstep is selected, the motherboard uses two areas of memory to run the same set of operations in parallel.
  • Page 104 UPER TORAGE YSTEM 6047R-E1CR36N User's Manual DRAM RAPL This item allows the user to select the average power limit setting when a DRAM module is in operation. The options are Disabled, Mode 0, and Mode 1. Device Tagging Select Enabled to support device tagging. The options are Disabled and En- abled.
  • Page 105 Chapter 7: BIOS Legacy USB Support (Available when USB Functions is not Disabled) Select Enabled to support legacy USB devices. Select Auto to disable legacy sup- port if USB devices are not present. Select Disable to have USB devices available for EFI (Extensive Firmware Interface) applications only.
  • Page 106 UPER TORAGE YSTEM 6047R-E1CR36N User's Manual Aggressive Link Power Management Select Enabled to enable Aggressive Link Power Management support for Cougar Point B0 stepping and beyond. The options are Enabled and Disabled. Port 0~5 Hot Plug Select Enabled to enable hot-plug support for a particular port, which will allow the user to change a hardware component or device without shutting down the system.
  • Page 107 Chapter 7: BIOS Thermal Configuration Thermal Management Select Enabled to initialize the PCH Thermal subsystem device located at D31:F6. The options are Enabled and Disabled. ME SMBus Thermal Reporting Select Enabled to support ME SMBus (System Management Bus) reporting. The options are Enabled and Disabled.
  • Page 108 UPER TORAGE YSTEM 6047R-E1CR36N User's Manual PERR# Generation Select Enabled to allow a PCI device to generate a PERR number for a PCI Bus Signal Error Event. The options are Enabled and Disabled. SERR# Generation Select Enabled to allow a PCI device to generate an SERR number for a PCI Bus Signal Error Event.
  • Page 109 Chapter 7: BIOS Option ROM is Enabled, and the default settings for LAN2 Option ROM~LAN4 Option ROM are Disabled. VGA Priority This feature allows the user to select the graphics adapter to be used as the primary boot device. The options are Onboard VGA, and Add-on VGA. Network Stack Select Enabled enable PXE (Preboot Execution Environment) or UEFI (Unified Extensible Firmware Interface) for network stack support.
  • Page 110 UPER TORAGE YSTEM 6047R-E1CR36N User's Manual Console Redirection Settings This feature allows the user to specify how the host computer will exchange data with the client computer, which is the remote computer used by the user. Terminal Type This feature allows the user to select the target terminal emulation type for Con- sole Redirection.
  • Page 111 Chapter 7: BIOS VT-UTF8 Combo Key Support Select Enabled to enable VT-UTF8 Combination Key support for ANSI/VT100 terminals. The options are Enabled and Disabled. Recorder Mode Select Enabled to capture the data displayed on a terminal and send it as text messages to a remote server.
  • Page 112 UPER TORAGE YSTEM 6047R-E1CR36N User's Manual TPM State Select Enabled to enable TPM security settings to improve data integrity and network security. The options are Disabled and Enabled. Pending Operation: This item displays the status of a pending operation. Current Status Information: This item displays the information regarding the current TPM status.

  • Page 113: Event Logs

    Chapter 7: BIOS TPM Support: Trusted Platform support TPM State: Trusted Platform state Intel ME Subsystem Configuration This feature displays the following ME Subsystem Configuration settings. • ME BIOS Interface Version • ME Version iSCSI: This item displays the following iSCSI information: iSCSI Initiation Name: This item displays the name of the iSCSI Initiator, which is a unique name used in the world.
  • Page 114 UPER TORAGE YSTEM 6047R-E1CR36N User's Manual Change SMBIOS Event Log Settings  This feature allows the user to configure SMBIOS Event settings. Enabling/Disabling Options SMBIOS Event Log Select Enabled to enable SMBIOS (System Management BIOS) Event Logging during system boot. The options are Enabled and Disabled.
  • Page 115 Chapter 7: BIOS METW (Multiple Event Count Time Window) This item allows the user to decide how long (in minutes) should the multiple event counter wait before generating a new event log. Enter a number between 0 to 99. The default setting is 60. View SMBIOS Event Log This item allows the user to view the event in the SMBIOS event log.

  • Page 116: Ipmi

    UPER TORAGE YSTEM 6047R-E1CR36N User's Manual IPMI Use this feature to configure Intelligent Platform Management Interface (IPMI) settings. IPMI Firmware Revision This item indicates the IPMI firmware revision used in your system. IPMI Status This item indicates the status of the IPMI firmware installed in your system.
  • Page 117 Chapter 7: BIOS When SEL is Full This feature allows the user to decide what the BIOS should do when the system event log is full. Select Erase Immediately to erase all events in the log when the system event log is full. The options are Do Nothing and Erase Immediately. Customize EFI Logging Options Log EFI Status Codes Select Enabled to log EFI (Extensible Firmware Interface) Status Codes, Error...

  • Page 118: Boot

    UPER TORAGE YSTEM 6047R-E1CR36N User's Manual Boot This submenu allows the user to configure the following boot settings for the system. Boot Option Priorities Boot Option #1 This item allows the user to select the first boot drive. Select a LAN device to boot the system from the network connection.

  • Page 119: Security

    Chapter 7: BIOS Security This menu allows the user to configure the following security settings for the system. Administrator Password Use this feature to set the Administrator Password which is required to enter the BIOS setup utility. The length of the password should be from 3-character long to 8-character long.

  • Page 120: Save & Exit

    UPER TORAGE YSTEM 6047R-E1CR36N User's Manual Save & Exit This submenu allows the user to configure the Save and Exit settings for the system. Discard Changes and Exit Select this option to quit the BIOS Setup without making any permanent changes to the system configuration, and reboot the computer.
  • Page 121 Chapter 7: BIOS Discard Changes Select this feature and press <Enter> to discard all the changes and return to the BIOS setup. When the dialog box appears, asking you if you want to load previ- ous values, click Yes to load the values previous saved, or click No to keep the changes you've made so far.
  • Page 122 UPER TORAGE YSTEM 6047R-E1CR36N User's Manual Notes 7-32...

  • Page 123: Appendix A Bios Error Beep Codes

    Appendix A: BIOS Error Beep Codes Appendix A BIOS Error Beep Codes During the POST (Power-On Self-Test) routines, which are performed at each system boot, errors may occur. Non-fatal errors are those which, in most cases, allow the system to continue to boot.
  • Page 124 UPER TORAGE YSTEM 6047R-E1CR36N User's Manual Notes...

  • Page 125: Appendix B System Specifications

    Four PCI-E 3.0 x16 slots, one PCI-E 3.0 x8 slot and one PCI-E 3.0 x4 (in a x8) slot on the serverboard - the 6047R-E1CR36N can accommodate up to three PCI-E x16 and one PCI-E x8 low-profile expansion (add-on) cards. Note that some PCI slots may not be enabled if only a single processor is installed (see p.
  • Page 126 UPER TORAGE YSTEM 6047R-E1CR36N User's Manual Serverboard X9DRi-LN4F+ (Extended ATX form factor) Dimensions: 13.68 x 13 in (347 x 330 mm) Chassis SC847BE1C-R1K28LPB, 4U rackmount Dimensions: (WxHxD) 17.2 x 7 x 26 in. (437 x 178 x 660 mm) Weight Net: 78 lbs.
  • Page 127 Appendix B: System Specifications Regulatory Compliance Electromagnetic Emissions: FCC Class A, EN 55022 Class A, EN 61000-3-2/-3-3, CISPR 22 Class A Electromagnetic Immunity: EN 55024/CISPR 24, (EN 61000-4-2, EN 61000-4-3, EN 61000-4-4, EN 61000-4-5, EN 61000-4-6, EN 61000-4-8, EN 61000-4-11) Safety: CSA/EN/IEC/UL 60950-1 Compliant, UL or CSA Listed (USA and Canada), CE Marking (Europe) California Best Management Practices Regulations for Perchlorate Materials:...
  • Page 128 UPER TORAGE YSTEM 6047R-E1CR36N User's Manual (continued from front) The products sold by Supermicro are not intended for and will not be used in life support systems, medical equipment, nuclear facilities or systems, aircraft, aircraft devices, aircraft/emergency com- munication devices or other critical systems whose failure to perform be reasonably expected to result in significant injury or loss of life or catastrophic property damage.

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