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Zeiss Elyra Abridged Instructions
Zeiss Elyra Abridged Instructions

Zeiss Elyra Abridged Instructions

Tirf confocal microscope
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Wellcome Trust Centre for Human Genetics
Cellular-Imaging Microscopy Core
The Zeiss Elyra TIRF
Confocal
Abridged INSTRUCTIONS
Page | 1

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Summary of Contents for Zeiss Elyra

  • Page 1 Wellcome Trust Centre for Human Genetics Cellular-Imaging Microscopy Core The Zeiss Elyra TIRF Confocal Abridged INSTRUCTIONS Page | 1...
  • Page 2 Introduction The Zeiss Elyra TIRF PALM/STORM super-resolution microscope is located in room 00/071, Lab 1 in the WTCHG building. The new Zeiss Elyra TIRF microscope has: • Zeiss Observer wide-field inverted TIRF flourescence microscope • X-Cite 120Q fluorescence excitation illuminator •...
  • Page 3: General Information

    EM Gain for brightness in ‘Acquisition’. Unlike the Zeiss Spinning Disk microscope in OPIC, you can’t go above 300 in EM Gain with the camera (it’s locked in software ). The EM Gain going from 1 to 200 goes from the equivalent of ½...
  • Page 4 The motorised Piezo Z stage is only controlled by the Zen Black software. The microscope stand and the Zeiss microscope remote LCD station only move the main microscope Z motor. The Piezo stage has a total range of 100um.
  • Page 5 You can do a multi-location time lapse with an identical z stack, and say a 3x3 raster scan at each location in time-lapse. The Elyra isn’t a confocal and the Core’s Zeiss Spinning Disk confocal system should be more ‘gentle’ with live cells. Start with lower laser power as the Elyra has high powered lasers (around 100mW).
  • Page 6 The X-cite Series 120PC Q The X-Cite takes a minute or so warm up Use the Mode button to select three modes: 1. Press mode and when OOOO. appears on the display this is the number of hours the arc lamp has been on 2.
  • Page 7 For details on the operation of the Elrya TIRF super-resolution microscope see the Ziess Elyra manual, and in particular the ‘Elyra Quick Guide’ (after chapter 7 of the manual) – a pdf download of the Quick Guide is available via the Core’s Elyra web-pages.
  • Page 8: Switch On Procedure

    561nm TRITC/DsRed. There are four different emission filter sets for DAPI, GFP, DsRed and Cy5 far red, selectable via Zen Black. Warning: The Elyra lasers are shuttered off by magnetic micro-switches if one of the access doors is left open on the blackened live cell incubator chamber.
  • Page 9: Switch Off Procedure

    Switch off procedure Remove the specimen from the microscope stage Wipe off excess immersion fluid from the 100x oil objective lens/top using the Whatman 105 lens cleaning tissues provided The 10x and 20x air objectives don’t need cleaning after use. Leave the 10x objective selected on the microscope nose-piece to minimise any possibility of damage during start-up when the XY motorised stage initialises...
  • Page 10 If you have any microscope/imaging problems or queries, just ask a member of the Microscopy Core staff for help. There is additional help and advice on our Core web-pages: http://www.well.ox.ac.uk/microscopy June 2014 . WTCHG Zeiss Cell Observer SD microscope user guide. This version updated 26 Page | 10...

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