Thermo Scientific Applied Biosystems GeneChip Scanner 3000 Targeted Genotyping System Manuals

Manuals and User Guides for Thermo Scientific Applied Biosystems GeneChip Scanner 3000 Targeted Genotyping System. We have 1 Thermo Scientific Applied Biosystems GeneChip Scanner 3000 Targeted Genotyping System manual available for free PDF download: Operation And Use

Thermo Scientific Applied Biosystems GeneChip Scanner 3000 Targeted Genotyping System Operation And Use

Thermo Scientific Applied Biosystems GeneChip Scanner 3000 Targeted Genotyping System Operation And Use (74 pages)

Brand: Thermo Scientific | Category: Laboratory Equipment | Size: 7 MB

Table of Contents

Table of Contents
3
CHAPTER 1 Introduction

7
- Product Overview
  7
- Instrument Usage Information
  7
- Other Documentation
  7
- Terminology
  7
- Alerts
  8
- Warnings and Precautions
  8
- General Chemical Safety
  9
- Biological Hazard Safety
  9
- Fluid Safety
  10
- Equipment Safety
  10
- Disposal Information and Guidance
  10
- Precautions
  10
- Customer Support
  11
CHAPTER 2 System Overview

12
- Hardware
  12
- Standard Hardware Components
  12
- Fluidics Station 450
  13
- Scanner 3000 with Autoloader
  13
- Genechip Hybridization Oven 645I
  13
- Optional Hardware Components
  13
- Software
  14
- Gcdc
  14
- Library and Fluidics Protocol Files
  14
- GCDC Launcher
  14
- Launcher Modules
  15
- GCDC Workflow Overview
  15
- How GCDC Processes Arrays
  15
- How GCDC Processes Cartridge Arrays
  15
- Registration
  16
- Registering the Samples and Arrays
  16
- Registering Sample Options
  16
- Editing User Attributes
  16
- Washing and Staining Cartridge Arrays
  16
- Running the Scanners
  16
- Tracking Gridding and CEL File Generation
  16
- GCDC File Types
  17
- Sample Files
  17
- Log Files
  17
- Customer Support
  17
CHAPTER 3 System Operation Basics

18
CHAPTER 4 Genechip Fluidics Station FS450

20
- Before You Begin
  20
- Warnings and Precautions
  20
- When to Contact Support
  21
- About the Instrument
  21
- Modules
  22
- Components
  22
- Connections
  24
- Using the Fluidics Station 450
  24
- Assay Documentation
  24
- Fluidics Station 450 Protocols
  24
- Fluidics Station Operation
  25
- Starting the Fluidics Station
  25
- Priming Fluidics Station
  25
- Priming the Fluidics Station
  25
- Fluidics Control
  26
- Fluidics Control Window
  27
- Master Controls
  27
- Station Controls
  27
- Status Window
  28
- Running Protocols
  29
- Priming the Fluidics Station
  29
- Running a Fluidics Station Protocol
  30
- Shutting down the Fluidics Station
  33
- Fluidics Station Care and Maintenance
  35
- Instrument Care
  35
- Fluidics Station Bleach Protocol
  35
- Bleach Cycle
  36
- Rinse Cycle
  38
- Peristaltic Tubing Maintenance
  40
- Replacing the Peristaltic Tubing
  40
- Fluidics Station Troubleshooting and Assistance
  42
- Troubleshooting Decision Tree
  42
- Problems and Solutions
  44
- Error Message Meanings
  46
- Other Problems and Solutions
  47
- When to Contact Support
  48
- Fluidics Station LCD Messages
  48
CHAPTER 5 Genechip Scanner 3000 with Autoloader

50
- Before You Begin
  50
- About the Instrument
  50
- Safe Operation
  51
- Precautions
  51
- Laser Safety
  51
- Location of Safety Symbols
  52
- Electrical Safety
  54
- Connections
  55
- Workstation: Rear Connections
  55
- Scanner: Rear Connections
  56
- Scanner Indicator Lights and On/Off Button
  57
- Buttons and Indicators
  57
- Indicator Lights Summary Table
  58
- Scanning Arrays
  58
- Use of Tough-Spots™ to Prevent Leaks
  58
- Loading Arrays into Carousel
  59
- Starting the Scanner
  61
- Shutting down the Scanner
  61
- Using GCDC with the Autoloader Disabled
  61
- Cleaning and Maintenance
  63
- Troubleshooting
  63
- Scanner Troubleshooting Table
  63
- Scanner Operation Issues Table
  64
- Scanner Diagnostic Table
  64
- Scanner Error Messages
  65
- Removing a Lodged Array Cartridge Manually
  65
- When to Contact Support
  69
APPENDIX A Specifications and Labeling Information

70
- Specifications
  70
- Genechip Fluidics Station 450
  70
- Scanner
  70
- Hybridization Oven
  71
- Labeling Symbols
  72
APPENDIX B Collecting Log Files

73
- Using the Log Collector
  73

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