MSI S2206 User Manual
MSI S2206 User Manual

MSI S2206 User Manual

Server motherboard
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S2206
S1206
MS-S3121
Server Motherboard
User Guide

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Summary of Contents for MSI S2206

  • Page 1 S2206 S1206 MS-S3121 Server Motherboard User Guide...
  • Page 2: Table Of Contents

    Contents Regulatory Notices ....................... 4 Safety Information ......................6 Specifications ........................ 7 Overview of Components ..................... 9 Rear I/O Panel ......................11 UID LED/ BMC Reset Button ..................11 USB 3.2 Gen 1 Type-A Port ..................11 COM RJ45 Port ......................11 GbE RJ45 Port (Optional) &...
  • Page 3 Power Connectors ...................... 28 PSU_PWR1~2: CRPS Power Connectors ..............28 GPU_PWR1~6: 8-Pin GPU Power Connectors ............28 HDD_PWR1~2: 8-Pin HDD BP Power Connectors ..........28 HDD_PWR3: 4-Pin Rear HDD BP Power Connector ..........29 Cooling Connectors ....................30 F2U-1~6: 2U System Fan Connectors..............30 F1U-1~8: 1U System Fan Connectors..............
  • Page 4: Regulatory Notices

    Chemical Substances Information In compliance with chemical substances regulations, such as the EU REACH Regulation (Regulation EC No. 1907/2006 of the European Parliament and the Council), MSI provides the information of chemical substances in products at: https://csr.msi.com/global/index CE Conformity Hereby, Micro-Star International CO., LTD declares that this device is in compliance with the essential safety requirements and other relevant provisions set out in the European Directive.
  • Page 5 Copyright and Trademarks Notice Copyright © Micro-Star Int’l Co., Ltd. All rights reserved. The MSI logo used is a registered trademark of Micro-Star Int’l Co., Ltd. All other marks and names mentioned may be trademarks of their respective owners. No warranty as to accuracy or completeness is expressed or implied.
  • Page 6: Safety Information

    Safety Information ∙ Always read the safety instructions carefully. ∙ Keep this User’s Manual for future reference. ∙ Keep this equipment away from humidity. ∙ Lay this equipment on a reliable flat surface before setting it up. ∙ The openings on the enclosure are for air convection hence protects the equipment from overheating.
  • Page 7: Specifications

    Specifications Model MS-S3121 Form factor L-shape Dimensions 428mm (16.9”W) x 477mm (18.8”D) Processor Dual AMD EPYC™ 9004 and 9005 series processors, TDP up to 360W Socket 2 x AMD Socket SP5 ∙ 2 x GbE RJ45 ports (optional) Networking - Intel® LAN controller I350-AM2 ∙...
  • Page 8 Model MS-S3121 ∙ 6 x 6-pin chassis hot-swap fan connectors (2U) Cooling ∙ 8 x 8-pin chassis fan connectors (1U) Connectors ∙ 2 x 4-pin CPU PWM fans connectors ∙ 6 x 8-pin GPU power connectors Power ∙ 2 x 8-pin HDD BP power connectors (12V) Connectors ∙...
  • Page 9: Overview Of Components

    Overview of Components JVGA1 COM1 USB2 USB1 MLAN1 LAN2 LAN1 JUID_SEL1 BAT1 RISER2 JRTC_CLR1 SEG_LED1~4 RISER3 MSD1 BMC_HB_LED OCP1 JCHASSIS1 RISER1 JSPI_MUX1 RISER4 M2_1 M2_2 JBIOS_SYS1 JTPM1 JFP_VGA1 JSPI1 BMC_JTAG1 JSEL_BMC1 JBIOS_LOC1 BMC_F1 BMC_F2 JIPMB1 GPU_PWR5 JSATA_NVME_SW1 PSU_PWR2 PSU_PWR1 JMCIO4 JUSB1 HDD_PWR3 JSGPIO_PCH...
  • Page 10 CPU1_DIMM_F1 CPU1_DIMM_E1 CPU1_DIMM_D1 CPU1_DIMM_C1 CPU1_DIMM_B1 CPU1_DIMM_A1 CPU1 CPU1_DIMM_G1 CPU1_DIMM_H1 CPU1_DIMM_I1 CPU1_DIMM_J1 CPU1_DIMM_K1 CPU1_DIMM_L1 CPU0_DIMM_F1 CPU0_DIMM_E1 CPU0_DIMM_D1 CPU0_DIMM_C1 CPU0_DIMM_B1 CPU0_DIMM_A1 CPU0 CPU0_DIMM_G1 CPU0_DIMM_H1 CPU0_DIMM_I1 CPU0_DIMM_J1 CPU0_DIMM_K1 CPU0_DIMM_L1 Overview of Components...
  • Page 11: Rear I/O Panel

    Rear I/O Panel GbE RJ45 Port USB 3.2 Gen 1 GbE RJ45 Port (Optional) Type-A Port (for mgmt.) VGA Port COM RJ45 Port UID LED/ BMC Reset Button UID LED/ BMC Reset Button In the default setting, this button is configured as a UID button. By using the JUID_SEL1 jumper, users can set it as a BMC Reset Button.
  • Page 12: Block Diagram

    Block Diagram CPU0 CPU1 32 Gbps 6 x DIMM Slots DDR5 CH A~F DDR5 CH A~F 6 x DIMM Slots (1DPC) Socket SP5 Socket SP5 (1DPC) XGMI 16X CPU0_DIMM_A1 CPU1_DIMM_A1 CPU0_DIMM_F1 CPU1_DIMM_F1 XGMI 16X 6 x DIMM Slots DDR5 CH G~L XGMI 16X 6 x DIMM Slots DDR5 CH G~L...
  • Page 13: Component Contents

    Component Contents Component Page CPU Socket Memory Slots CPU0_DIMM_A1~L1, CPU1_DIMMA1~L1: DDR5 DIMM Slots Storage Connectors MSD1: Micro SD Card Slot JMCIO1~4: MCIO 4i Connectors JMCIO5~6: MCIO 8i Connectors JSLIM4X_1: Slimline SAS 4i Connector M2_1~2: M.2 Slots (M Key, PCIe 3.0 x2, 2280) Expansion Slots RISER1~4: PCIe Expansion Slots OCP1: OCP (Open Compute Project) LAN Mezzanine Slot...
  • Page 14 Component Page FBP_I2C_1, RBP_I2C_1~2: I2C Headers JSGPIO_PCH: Rear Side BP SGPIO Header BAT1: CMOS Battery Jumpers Onboard LEDs BMC_HB_LED: BMC Heartbeat LED SEG_LED1~4: Port 80 Debug LEDs...
  • Page 15: Cpu Socket

    CPU Socket CPU1 CPU0 ⚠ Important Overheating will seriously damage the CPU and system. Always make sure the ∙ cooling fan can work properly to protect the CPU from overheating. Make sure that you apply an even layer of thermal paste (or thermal tape) between the CPU and the heatsink to enhance heat dissipation.
  • Page 16: Cpu Installation

    CPU Installation Use appropriate ground straps, gloves and ESD mats to protect yourself from electrostatic discharge (ESD) while installing the processor. ⚠ Important Images are for illustration purposes only; actual parts may vary. 1. Remove the screw on the top of the retention frame. 2.
  • Page 17 4. Pull the external cap upward through the rail guides on the rail frame to remove it. 5. Grip the handle of the carrier frame and slide it downward with the flanges and the rail guides aligned. CPUs are shipped from the factory with pre-assembled carrier frames. ∙...
  • Page 18 7. Push the retention frame downward and use a torque screwdriver to tighten the screw in the middle. Torque Screwdriver Settings Screw Head: Torx T20 Torque: 12.5-15 kgf·cm* *12.5-15 kgf·cm = 122.6~147 N·m = 10.9~13 lbf·in 8. For peak thermal performance, apply proper amount of thermal paste to the bottom center of the heatsink.
  • Page 19: Memory Slots

    Memory Slots CPU0_DIMM_A1~L1, CPU1_DIMMA1~L1: DDR5 DIMM Slots CPU1_DIMM_F1 CPU1_DIMM_E1 CPU1_DIMM_D1 CPU1_DIMM_C1 CPU1_DIMM_B1 CPU1_DIMM_A1 CPU1 CPU1_DIMM_G1 CPU1_DIMM_H1 CPU1_DIMM_I1 CPU1_DIMM_J1 CPU1_DIMM_K1 CPU1_DIMM_L1 CPU0_DIMM_F1 CPU0_DIMM_E1 CPU0_DIMM_D1 CPU0_DIMM_C1 CPU0_DIMM_B1 CPU0_DIMM_A1 CPU0 CPU0_DIMM_G1 CPU0_DIMM_H1 CPU0_DIMM_I1 CPU0_DIMM_J1 CPU0_DIMM_K1 CPU0_DIMM_L1 Memory Slots...
  • Page 20: Recommended Memory Population

    Recommended Memory Population D C B D C B CPU1 CPU0 1 CPU Channel Qty. of DDR5 2 CPUs Channel Qty. of DDR5 CPU1 CPU0 CPU1 CPU0 CPU1 CPU0 CPU1 CPU0 CPU1 CPU0 CPU1 CPU0 CPU1 CPU0 CPU1 CPU0 “V” indicates DIMMs are populated with DDR5. ⚠...
  • Page 21: Installing Memory Modules

    Installing Memory Modules 1. Open the side clips to unlock the DIMM slot. 2. Insert the DIMM vertically into the slot, ensuring that the off-center notch at the bottom aligns with the slot. 3. Push the DIMM firmly into the slot until it clicks and the side clips automatically close.
  • Page 22: Storage Connectors

    Storage Connectors MSD1 M2_2 M2_1 JMCIO4 JMCIO3 JSLIM4X_1 JMCIO5 JMCIO2 JMCIO1 JMCIO6 Name Description JSLIM4X_1 PCIe 3.0 x4, 8GT/s PCIe 4.0 x4, 16GT/s (default) JMCIO1~4 SATA 3.0, 6Gb/s JMCIO5~6 PCIe 4.0 x8, 16GT/s M2_1~2 PCIe 3.0 x2, 8GT/s MSD1: Micro SD Card Slot This slot is for inseriting the micro SD card.
  • Page 23: Jmcio1~4: Mcio 4I Connectors

    JMCIO1~4: MCIO 4i Connectors These are right-angle 38-pin Mini Cool Edge IO (MCIO) connectors, which support PCIe 4.0 x4 16GT/s and SATA 3.0 6Gb/s interfaces. A JSATA_NVME_SW1 jumper can be used to switch signals between SATA and PCIe NVMe (default). RXP0 TXP0 RXN0...
  • Page 24: Jmcio5~6: Mcio 8I Connectors

    JMCIO5~6: MCIO 8i Connectors These are vertical 74-pin Mini Cool Edge IO (MCIO) connectors, which support PCIe 4.0 x8 16GT/s interface RXP0 TXP0 RXN0 TXN0 RXP1 TXP1 RXN1 TXN1 I2C_CLK1 HP_INT_L1 I2C_DATA1 PCIe CLK_P1 PCIe_RST1 PCIe CLK_N1 PRSNT_N (NC) RXP2 TXP2 JMCIO5~6 RXN2...
  • Page 25: Jslim4X_1: Slimline Sas 4I Connector

    JSLIM4X_1: Slimline SAS 4i Connector This is 38-pin Slimline SAS 4i connector, which support PCIe 3.0 x4 8GT/s interface RXP0 TXP0 RXN0 TXN0 RXP1 TXP1 RXN1 TXN1 JSLIM4V_1 I2C_CLK HP_INT_L I2C_DATA PCIe CLK_P PCIe_RST PCIe CLK_N PRSNT_N (NC) RXP2 TXP2 RXN2 TXN2 RXP3...
  • Page 26: M2_1~2: M.2 Slots (M Key, Pcie 3.0 X2, 2280)

    M2_1~2: M.2 Slots (M Key, PCIe 3.0 x2, 2280) Please install the M.2 solid-state drive (SSD) into the M.2 slot as shown below. Installing M.2 SSD ⚽ Video Demonstration Watch the video to learn how to Install M.2 SSD. 1. Insert your M.2 SSD into the M.2 slot at a 30-degree angle.
  • Page 27: Expansion Slots

    Expansion Slots RISER1: PCIe 5.0 x 32 slot (from CPU0) RISER2: PCIe 5.0 x 32 slot (from CPU1) RISER3: PCIe 5.0 x 16 slot (from CPU1) RISER4: Fixed slot OCP1: OCP 3.0 SFF (PCIe 5.0 x16 slot, from CPU0) RISER1~4: PCIe Expansion Slots The PCI Express(Peripheral Component Interconnect Express) slots support PCIe interface expansion cards.
  • Page 28: Power Connectors

    Power Connectors PSU_PWR1 PSU_PWR2 GPU_PWR1 HDD_PWR3 GPU_PWR2 GPU_PWR6 GPU_PWR3 GPU_PWR5 GPU_PWR4 HDD_PWR2 HDD_PWR1 PSU_PWR1~2: CRPS Power Connectors These CRPS (Common Redundant Power Supplies) connectors allow you to connect a power supply. To connect the power supply, ensure that the plug is inserted in the proper orientation and that the pins are aligned.
  • Page 29: Hdd_Pwr3: 4-Pin Rear Hdd Bp Power Connector

    HDD_PWR3: 4-Pin Rear HDD BP Power Connector This connector provides power output to HDDs on rear side. HDD_PWR3 P12V ⚠ Important Make sure that all power connectors are securely connected to the power supply to ensure stable operation of the motherboard. Power Connectors...
  • Page 30: Cooling Connectors

    Cooling Connectors CPU_FAN1 CPU_FAN2 F2U-1 F2U-2 F2U-3 F2U-4 F2-U5 F2U-6 F1U-1 F1U-2 F1U-3 F1U-4 F1U-5 F1U-6 F1U-7 F1U-8 F2U-1~6: 2U System Fan Connectors The fan power connectors support 2U system cooling fans. P12V F2U-1~6 FAN_TACH FAN_PWM FAN_FAULT F1U-1~8: 1U System Fan Connectors The fan power connectors support 1U system cooling fans.
  • Page 31: Usb Connectors

    USB Connectors JUSB1 JUSB2 JUSB1: USB 3.2 Gen 1 Type-A Port The USB (Universal Serial Bus) port is used for connecting USB devices such JUSB1 as keyboards, mice, or other compatible peripherals. It supports data transfer rates up to 5 Gbps and is backward-compatible with USB 2.0 devices. JUSB2: USB 3.2 Gen 1 FPC Connector This port is backward-compatible with USB 2.0 devices and supports data transfer rate up to 5 Gbps.
  • Page 32: Other Connectors And Components

    Other Connectors and Components JCHASSIS1: Chassis Intrusion Header This connector connects to the chassis intrusion switch cable. If the chassis is opened, the chassis intrusion mechanism will be activated. The system will record this status and show a warning message on the screen. To clear the warning, you must enter the BIOS utility and clear the record.
  • Page 33: Jtpm1: Spi Tpm Header

    JTPM1: SPI TPM Header This header connects to a TPM (Trusted Platform Module) module (optional). Please refer to the TPM security platform manual for more details. P3V3_AUX SPI_CPU0_3V3_CLK SPI_CPU0_3V3_MISO JTPM1 SPI_CPU0_3V3_MOSI SPI_TPM_CS_N IRQ_TPM_SPI_N P3V3_AUX TPM_RESET_N P3V3_AUX JTPM1 Other Connectors and Components...
  • Page 34: Jfp_Vga1: Front Vga Header

    JFP_VGA1: Front VGA Header The VGA header is provided for monitors. F_RED F_GRN JFP_VGA1 F_BLU F_VS F_HS F_DDCDAT SEL_FP_N F_DDCCLK F_VGA_5V JFP_VGA1 Other Connectors and Components...
  • Page 35: Fbp_I2C_1, Rbp_I2C_1~2: I2C Headers

    FBP_I2C_1, RBP_I2C_1~2: I2C Headers I2C headers are used to connect to the System Management Bus (SMBus). FBP_I2C_1 is for front HDD backplane, and RBP_I2C_1~2 are for rear HDD backplanes. FBP_I2C_1 I2C_DAT RBP_I2C_1 RBP_I2C_2 I2C_CLK JSGPIO_PCH: Rear Side BP SGPIO Header SGPIO_SATA_CLOCK_RBP JSGPIO_PCH SGPIO_SATA_LOAD_RBP...
  • Page 36: Bat1: Cmos Battery

    BAT1: CMOS Battery If the CMOS battery is out of charge, the time in the BIOS will be reset and the data of system configuration will be lost. In this case, you need to replace the CMOS battery. Replacing CMOS battery 1.
  • Page 37: Jumpers

    Jumpers ⚠ Important Avoid adjusting jumpers when the system is on; it will damage the motherboard. JUID_SEL1 JRTC_CLR1 JSPI_MUX1 JSEL_BMC1 JSATA_NVME_SW1 Jumper Name Default Setting Description 1-2: BIOS1 & allows BMC to switch (Default) JSPI_MUX1 2-3: BIOS2 (backup only, use when BIOS1 flash crashes) 1-2: BMC1 (Default) JSEL_BMC1 2-3: BMC2...
  • Page 38: Onboard Leds

    Onboard LEDs BMC_HB_LED: BMC Heartbeat LED This LED indicates the BMC (Baseboard Management Controller) status. Status Description BMC is not activated BMC is functioning normally Blinking BMC_HB_LED SEG_LED1~4: Port 80 Debug LEDs The Port 80 Debug LEDs display progress and error codes during and after POST (Power-On Self Test).
  • Page 39 EPS.MSI.COM MSI.COM...

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