Related Manuals for illumina DRAGEN Server v4
Summary of Contents for illumina DRAGEN Server v4
- Page 1 Illumina DRAGEN Server v4 Site Prep and Installation Guide ILLUMINA PROPRIETARY Document #200015717 v00 June 2022 For Research Use Only. Not for use in diagnostic procedures.
- Page 2 Illumina DRAGEN Server v4 Installation Guide This document and its contents are proprietary to Illumina, Inc. and its affiliates ("Illumina"), and are intended solely for the contractual use of its customer in connection with the use of the product(s) described herein and for no other purpose.
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Page 3: Table Of Contents
Illumina DRAGEN Server v4 Installation Guide Table of Contents Overview Site Preparation Delivery and Setup Facility Requirements Electrical Requirements Environmental Considerations Safety & Compliance Safety Considerations and Markings Compliance and Regulatory Markings Set Up the DRAGEN Server Install the Server Racks... -
Page 4: Overview
Illumina DRAGEN Server v4 Installation Guide Overview This resource provides instructions for setting up the Illumina® DRAGEN Server™ , including preparing your site for installation and operation. The CentOS Project will discontinue support of CentOS 7 on June 30, 2024. As a result, support for CentOS 7 on the DRAGEN Servers will end. -
Page 5: Site Preparation
Illumina DRAGEN Server v4 Installation Guide Site Preparation This section provides specifications and guidelines for preparing your site for installation and operation of the DRAGEN Server. • Laboratory space requirements • Electrical requirements • Environmental considerations Delivery and Setup The DRAGEN Server is unpacked and installed by the customer. The space must be ready before delivery. -
Page 6: Facility Requirements
Illumina DRAGEN Server v4 Installation Guide Facility Requirements Use the specifications and requirements provided in this section to set up your lab space. Equipment Dimensions Measurement Dimension Height 8.8 cm (3.46 in) Width 43.8 cm (17.24 in) Depth 76.0 cm (29.924 in) -
Page 7: Protective Earth
Illumina DRAGEN Server v4 Installation Guide For 100–240 Volts AC, your facility must be wired with a minimum 15 Amp grounded line with proper voltage. An electrical ground is required. If the voltage fluctuates more than 10%, a power line regulator is required. -
Page 8: Heat Output
Illumina recommends using a user- supplied uninterruptible power supply (UPS). Illumina is not responsible for data loss caused by interrupted power, regardless of whether the DRAGEN Server is connected to a UPS. Standard generator- backed power is often not uninterruptible, so a brief power outage occurs before power resumes. - Page 9 Illumina DRAGEN Server v4 Installation Guide International Japan North America APC Model Specification APC Model APC Model # SMX1500RMJ2U # SMX1500RM2UNC SMX1500RMI2UNC Maximum Output 1200 W 1500 VA 1200 W 1440 VA 1200 W 1500 VA Capacity Input Voltage 100 VAC...
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Page 10: Safety & Compliance
Illumina DRAGEN Server v4 Installation Guide Safety & Compliance This guide provides important safety information pertaining to the installation and operation of the DRAGEN Server. This guide includes product compliance and regulatory statements. Read this document before performing any procedures on the server. -
Page 11: Set Up The Dragen Server
Illumina DRAGEN Server v4 Installation Guide Set Up the DRAGEN Server This section provides information on installing the DRAGEN Server. Before beginning, make sure that you have all the components and your facility meets the requirements. The following components are not included with the DRAGEN Server and required to set up the server: •... - Page 12 Illumina DRAGEN Server v4 Installation Guide Figure 1 Expanded Rail Assembly Align the key slots to the T studs on the sides of the server and slide the mounting bracket back to lock into place. Document #200015717 v00 For Research Use Only. Not for use in diagnostic procedures.
- Page 13 Illumina DRAGEN Server v4 Installation Guide Repeat to attach the mounting bracket on the other side. Mount the Rail Assemblies in Rack Press down on the rail assembly mechanism to unlock the rear rail assembly lock. Align the rail assembly into the desired server rack brackets and push forward to lock into place.
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Page 14: Install The Server In The Rack
Illumina DRAGEN Server v4 Installation Guide Figure 2 Rail Assembly Aligned With Server Brackets Install the Server in the Rack Two people are recommended for moving the server. Facing the front of the rack, align the mounting brackets on the server with the slide rails inside the rack. - Page 15 Illumina DRAGEN Server v4 Installation Guide Figure 3 Secured Server Document #200015717 v00 For Research Use Only. Not for use in diagnostic procedures.
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Page 16: Server Ports
Illumina DRAGEN Server v4 Installation Guide Server Ports The following figure indicates the port location for each cable required when installing the Illumina DRAGEN Server. Figure 4 Rear of DRAGEN Server A. VGA port (monitor) B. 1 GB Ethernet port with interface name enp5s0 (BMC) C. -
Page 17: Shut Down The Server
Illumina DRAGEN Server v4 Installation Guide Connect your monitor to the DRAGEN Server using the VGA port. Connect your keyboard to the DRAGEN Server using any unoccupied USB port. Shut Down the Server You can shut down the DRAGEN Server directly from the command line. -
Page 18: Configure Settings
These activities can result in degraded performance or loss of data. Antivirus Software Illumina does not recommend running any virus scanners on the DRAGEN Server. Virus scanners often impact the performance of High- Performance Computing (HPC) systems. Restricted Ports and Authentication Outbound Connections lus.edicogenome.com port 80... -
Page 19: Network Considerations
Using the Network Manger Text User Interface (NMTUI), you can configure the IP address, gateway, DNS server, and additional options for your connection. Enter the user name and password. Refer to your Welcome email from the Illumina Support to get your user name and password. - Page 20 Illumina DRAGEN Server v4 Installation Guide Select Activate a connection to view your active Ethernet connection. The active Ethernet connection shows an asterisk in front of the connection name. Select Back. Select Edit a connection. Navigate to your active connection, and then select Edit.
- Page 21 Illumina DRAGEN Server v4 Installation Guide Example: timedatectl set-timezone Asia/Singapore To make sure that the server time has changed, enter: date ls -l /etc/localtime Synchronize Server Time to NTP Server Log in as root. Check if chrony daemon is running. Enter: systemctl status chronyd If the result from the previous command shows inactive or dead, enable the chrony daemon.
- Page 22 Illumina DRAGEN Server v4 Installation Guide systemctl restart chronyd Check the health of the local time server. Enter: timedatectl Make sure that DRAGEN Server can synchronize with the local NTP server using one of the following commends: • chronyc tracking (Manual) •...
- Page 23 Illumina DRAGEN Server v4 Installation Guide systemctl enable chronyd To start the daemon, enter: systemctl start chronyd Edit /etc/chrony.conf using vi. Enter: vi /etc/chrony.conf Replace the default NTP server settings to the local NTP server. Example: Original default settings: server 0.centos.pool.ntp.org iburst server 1.centos.pool.ntp.org iburst...
- Page 24 Log in as root using the root password provided in the DRAGEN Server welcome email. If you have not received your sign in credentials, contact Illumina Customer Service. If signing in for the first time, reset your password.
- Page 25 Restarts the network manager service Allow Root Log in by SSH To access the Illumina DRAGEN Server remotely, you must enable root log in by SSH connections. By default, root log in from SSH connections are blocked. Log in as root.
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Page 26: Technical Assistance
Illumina DRAGEN Server v4 Installation Guide Technical Assistance For technical assistance, contact Illumina Technical Support. Website: www.illumina.com Email: techsupport@illumina.com Illumina Technical Support Telephone Numbers Region Toll Free International Australia +61 1800 775 688 Austria +43 800 006249 +43 1 9286540... - Page 27 +1 800 809 4566 +1 858 202 4566 Vietnam +84 1206 5263 Safety data sheets (SDSs)—Available on the Illumina website at support.illumina.com/sds.html. Product documentation—Available for download from support.illumina.com. Document #200015717 v00 For Research Use Only. Not for use in diagnostic procedures.
- Page 28 Document #200015717 v00 Illumina 5200 Illumina Way San Diego, California 92122 U.S.A. +1.800.809.ILMN (4566) +1.858.202.4566 (outside North America) techsupport@illumina.com www.illumina.com For Research Use Only. Not for use in diagnostic procedures. © 2022 Illumina, Inc. All rights reserved.
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