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Illumina DRAGEN Server
Installation Guide
Installing USB License Key
Network Configuration
Set Server Time
Advance Exchange
Document # 1000000075000 v01
September 2019
For Research Use Only. Not for use in diagnostic procedures.
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ILLUMINA PROPRIETARY
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Table of Contents
Related Manuals for illumina DRAGEN
Summary of Contents for illumina DRAGEN
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Page 1: Table Of Contents
Illumina DRAGEN Server Installation Guide Introduction Racking the Server Cabling Installing USB License Key BMC/iDRAC Configurations Network Configuration DNS Configuration Set Server Time External Storage License Activation Running the System Check Shutting Down the Server Advance Exchange Revision History Technical Assistance... - Page 2 Illumina DRAGEN Server Installation Guide This document and its contents are proprietary to Illumina, Inc. and its affiliates ("Illumina"), and are intended solely for the contractual use of its customer in connection with the use of the product(s) described herein and for no other purpose.
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Page 3: Introduction
DRAGEN command line options. Before You Begin The DRAGEN Server includes an Intel X710 DP 10 Gb DA/SFP+, +1350 DP 1 Gb Ethernet NIC. Illumina recommends that the DRAGEN Server is connected to an attached storage system with a 10 Gb link, using either copper or fiber cables. -
Page 4: Racking The Server
Illumina DRAGEN Server Installation Guide Hardware Specifications Table 1 DRAGEN Server Hardware Specifications Component Specification Processor Dual Intel Xeon Gold 6126 2.6 G, 12 C/24 T Memory 256 GB Scratch drive 2 TB Intel NVME P4600 OS drives 2x120 GB SSD in Raid 1 FPGA card... - Page 5 Illumina DRAGEN Server Installation Guide Pull the entire sliding rail past the front of the rack and snap it back into place. Figure 2 Sliding Rail Snapped onto Server Rack Install the second rail at the same level on the other side of the rack.
- Page 6 Illumina DRAGEN Server Installation Guide Extend the sliding rails completely. Figure 4 DRAGEN Server, Sliding Rails (Extended) and Server Rack Facing the front of the rack, use two people (one on either side) to lift the server in between the two extended rails, with the front of the server facing out.
- Page 7 Illumina DRAGEN Server Installation Guide Make sure that all eight screws are fully seated and locked. Figure 6 Black Flat Screw Seated in Notch Document # 1000000075000 v01 For Research Use Only. Not for use in diagnostic procedures.
- Page 8 Illumina DRAGEN Server Installation Guide Figure 7 Flat Black Screw in Notch - Unlocked Figure 8 Flat Black Screw in Notch - Locked Document # 1000000075000 v01 For Research Use Only. Not for use in diagnostic procedures.
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Page 9: Cabling
Illumina DRAGEN Server Installation Guide 10 Slide the server back onto the rack. Figure 9 DRAGEN Server Installed on Server Rack Cabling Figure 10 Rear of DRAGEN Server iDRAC Monitor 10 GB SFP Port 1 10 GB SFP Port 2 RJ45 1 GB Port 1... -
Page 10: Bmc/Idrac Configurations
10 Confirm that you want to exit to reboot the server. Network Configuration After the server has rebooted, log in using the credentials provided to you by your Illumina customer service representative. If you have not received login credentials, contact customerservice@illumina.com. -
Page 11: Dns Configuration
Illumina DRAGEN Server Installation Guide Save the file, enter: :wq! Enter systemctl restart network to restart network to apply the changes. After restarting the network service, verify the IP address. DNS Configuration Log in as root. Add the DNS server by editing /etc/resolv.config using vi, enter: vi/etc/resolv.conf... -
Page 12: External Storage
Restart the ntp daemon, enter: systemctl restart ntpd Check the health of the local to me server, enter: ntpq -p 10 Make sure that Dragen can synchronize with the local NTP server using the ntpdate command. Example: ntpdate -q 192.168.1.1 External Storage Mounting NFS on DRAGEN Server Locate your NFS Server and share name. -
Page 13: License Activation
Illumina DRAGEN Server Installation Guide To map this share to /mnt on the DRAGEN server, run the following command as root on your system: mount -t nfs 192.168.100.100:/share /mnt Share is mounted at 192.168.100.100:/share to the local file system under /mnt. -
Page 14: Running The System Check
Confirm that the license has been updated. Enter: /opt/edico/bin/dragen_lic Running the System Check After turning on the server, you can make sure that your DRAGEN server is functioning properly by running /opt/edico/self_test/self_test.sh, which does the following: Automatically indexes chromosome M from the hg19 reference genome... -
Page 15: Shutting Down The Server
If the output BAM file does not match expected results, then the last line of the above text is as follows: SELF TEST RESULT : FAIL If you experience a FAIL result after running this test script immediately after turning on your DRAGEN server, contact Illumina Technical Support. - Page 16 Once the system has been determined to be damaged or defective, Illumina ships out a replacement server before the original is shipped back. This is done to minimize the downtime customer experience with their system.
- Page 17 Illumina DRAGEN Server Installation Guide Return the Original Server Package the Server Clear adequate space in the lab for the server and packaging. Place the protective foam cover over the server. Place the foam pad at the bottom of the box.
- Page 18 If your facility has daily deliveries scheduled with UPS, give the labeled shipping box to the driver. If your facility does not have daily deliveries with UPS, notify Illumina Customer Service so that they can schedule the return shipment for you.
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Page 19: Revision History
Illumina DRAGEN Server Installation Guide Revision History Document Date Description of Change Document # September Added Advanced Exchange instructions. Added shutdown instructions. 1000000075000 v01 2019 Added DNS configuration information. Added BMC configuration information. Added information about changing system time settings. - Page 20 Illumina DRAGEN Server Installation Guide Document # 1000000075000 v01 For Research Use Only. Not for use in diagnostic procedures.
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Page 21: Technical Assistance
00806651752 United Kingdom +44 8000126019 +44 2073057197 Other countries +44.1799.534000 Safety data sheets (SDSs)—Available on the Illumina website at support.illumina.com/sds.html. Product documentation—Available for download from support.illumina.com. Document # 1000000075000 v01 For Research Use Only. Not for use in diagnostic procedures. - Page 22 Document # 1000000075000 v01 Illumina 5200 Illumina Way San Diego, California 92122 U.S.A. +1.800.809.ILMN (4566) +1.858.202.4566 (outside North America) techsupport@illumina.com www.illumina.com For Research Use Only. Not for use in diagnostic procedures. © 2019 Illumina, Inc. All rights reserved.
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