Thermo Scientific Ion Torrent A45727 Manuals

Manuals and User Guides for Thermo Scientific Ion Torrent A45727. We have 1 Thermo Scientific Ion Torrent A45727 manual available for free PDF download: User Manual

Thermo Scientific Ion Torrent A45727 User Manual (163 pages)

Integrated Sequencer

Brand: Thermo Scientific | Category: Laboratory Equipment | Size: 7.79 MB

Table of Contents
3
CHAPTER 1 Product Information

8
CHAPTER 2 Before You Begin

23
- Precautions
  23
- Guidelines for Genexus
  24
- Power the Genexus ™ Integrated Sequencer on or off
  25
  - Power on
    25
  - Power off
    26
- Get Started with Genexus ™ Software
  26
  - About the Genexus ™ Software User Interface
    26
  - User-Access Levels
    27
  - System Tracking
    27
  - Request and Sign in to a New Account
    27
  - Sign in
    28
CHAPTER 3 Create and Manage

29
CHAPTER 4 Enter Samples and Libraries

42
CHAPTER 5 Create and Manage Run Plans

55
- Create a Run Plan for a Sample Run
  56
- Create a Run Plan for a Library Run
  63
CHAPTER 6 Dilute the Samples and Load the Sample Plate

68
CHAPTER 7 Load the Sequencer and Start a Run

72
CHAPTER 8 Monitor the Run

84
- View Run Progress on the Instrument
  84
CHAPTER 9 Review Data and Results

85
- Run Results Screen
  86
- Lab Report
  88
  - Download the Lab Report
    89
- View Sequencing Results and Run Metrics
  89
  - Summary of the Sample Results
    91
  - Run Metrics
    92
  - QC Results
    94
  - SNV/INDEL Results
    95
  - Fusion Results
    97
  - CNV Results
    99
  - View Annotation Sources
    101
  - Create and Assign Variant Classifications
    102
  - Filter Results
    102
  - View Oncomine ™ TCR Beta-LR Assay GX Run Results
    105
- Sign off on the Run Results (Manager/ Administrator)
  107
  - Sign off on the Run Results (Manager/ a Dministrator)
    107
- Generate Customized Reports
  108
- Results Files
  109
- Review Coverageanalysis Plugin Results
  111
- Upload Sample Results Files to Ion Reporter ™ Software
  111
  - Software
    111
- Verification Runs
  113
  - View and Sign off on the Verification Run Results (Field Service Engineer)
    114
APPENDIX A Troubleshooting

117
- Genexus ™ Software
  117
- Genexus ™ Integrated Sequencer
  119
APPENDIX B Touchscreen Reference

120
- Touchscreen Icons
  120
- Settings
  121
  - Network Settings
    122
  - Perform a Clean Instrument Operation
    124
  - System Tools
    124
  - Data Management
    129
  - Instrument Settings
    131
APPENDIX C Supplemental Information

134
- Maintain the Sequencer
  134
  - Materials Required
    134
  - Clean or Decontaminate the Sequencer
    134
  - Replace the Genexus
    135
- Quantify FFPE DNA with the Qubit
  135
  - Filter
    135
  - Fluorometer
    135
- Guidelines for Using Custom Assays with the Genexus
  136
  - Integrated Sequencer
    136
- Planning Sequencing Runs for Efficient Use of Consumables
  138
- Configure an Ion Reporter
  139
  - Server Account (Administrator)
    139
  - Tag an Ion Reporter
    140
  - Ionreporteruploader Plugin
    140
- Configure Thermo Fisher (Connect) Accounts (Manager/Administrator)
  141
APPENDIX D Coverageanalysis Plugin in Genexussoftware

143
APPENDIX E Safety

150
- Symbols on this Instrument
  150
  - Standard Safety Symbols
    150
  - Additional Safety Symbols
    152
  - Location of Safety Labels
    152
  - Control and Connection Symbols
    153
  - Conformity Symbols
    153
- Instrument Safety
  154
  - General
    154
  - Physical Injury
    154
  - Electrical Safety
    155
  - Cleaning and Decontamination
    156
  - Instrument Component and Accessory Disposal
    156
- Safety and Electromagnetic Compatibility (EMC) Standards
  156
  - Safety Standards
    157
  - EMC Standards
    157
  - Environmental Design Standards
    158
  - Radio Compliance Standards
    158
- Chemical Safety
  159
- Biological Hazard Safety
  161
APPENDIX F Documentation and Support

162
- Related Documentation
  162
- Customer and Technical Support
  162
- Limited Product Warranty
  162

Thermo Scientific Categories

Laboratory Equipment Measuring Instruments Accessories

Refrigerator

Freezer

More Thermo Scientific Manuals

Thermo Scientific Ion Torrent A45727 Manuals

Thermo Scientific Ion Torrent A45727 User Manual (163 pages)

Table of Contents

CHAPTER 1 Product Information

CHAPTER 2 Before You Begin

CHAPTER 3 Create and Manage

CHAPTER 4 Enter Samples and Libraries

CHAPTER 5 Create and Manage Run Plans

CHAPTER 6 Dilute the Samples and Load the Sample Plate

CHAPTER 7 Load the Sequencer and Start a Run

CHAPTER 8 Monitor the Run

CHAPTER 9 Review Data and Results

APPENDIX A Troubleshooting

APPENDIX B Touchscreen Reference

APPENDIX C Supplemental Information

APPENDIX D Coverageanalysis Plugin in Genexussoftware

APPENDIX E Safety

APPENDIX F Documentation and Support

Related Products

Thermo Scientific Categories