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GRUNDIUM OCUS 40 User Manual

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Jukka Mattila, Grundium Ltd.
MGU-00002
USER GUIDE

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Summary of Contents for GRUNDIUM OCUS 40

  • Page 1 Jukka Mattila, Grundium Ltd. MGU-00002 USER GUIDE...

  • Page 2: Table Of Contents

    Switching off the scanner ................................. 26 Scanner settings ..................................26 15.1 Network settings ................................27 15.1.1 Internet ................................... 27 15.1.2 Ethernet .................................. 27 15.1.3 WLAN ..................................28 Saavutustenkatu 3, 33720 Tampere, Finland Ocus®40 MGU-00002 User Guide version 7.0 ©2022 Grundium. All rights reserved.
  • Page 3 Scan quality is bad or has other issues ..........................37 Certifications and patents ................................ 38 Customer care and support..............................39 Manufacturer information ............................... 39 Saavutustenkatu 3, 33720 Tampere, Finland Ocus®40 MGU-00002 User Guide version 7.0 ©2022 Grundium. All rights reserved.

  • Page 4: Sales Package Contents

    INTRODUCTION TO THE OCUS®40 WHOLE SLIDE IMAGE SCANNER The Grundium Ocus®40 MGU-00002 is a professional imaging instrument for digitizing microscope slides with sharpest image quality in the business. Integration-ready and very easy to use, the Ocus®40 enables both local and remote use anywhere in the world.

  • Page 5: Technical Specifications

    Impact protection IK06 Operating temperature +15 to +40 degrees Celsius (+59 to +104 Fahrenheit) Operating humidity 0-95% RH, non-condensing Operating altitude Max. 2000 m Saavutustenkatu 3, 33720 Tampere, Finland Ocus®40 MGU-00002 User Guide version 7.0 ©2022 Grundium. All rights reserved.

  • Page 6: Before You Start

    Note: Ocus scanner is a delicate instrument and not designed to withstand by itself stress from shipping/transportation – careful packing is required. (See full packing instructions in section 20). Saavutustenkatu 3, 33720 Tampere, Finland Ocus®40 MGU-00002 User Guide version 7.0 ©2022 Grundium. All rights reserved.

  • Page 7: Scanner Parts

    SCANNER PARTS Image 2. Scanner parts. Power button Lever Objective Slide retainer Cover plate Slide support glass X-Y-stage Overview camera Saavutustenkatu 3, 33720 Tampere, Finland Ocus®40 MGU-00002 User Guide version 7.0 ©2022 Grundium. All rights reserved.

  • Page 8: Scanner Connectors

    Power supply connector. Use only the power supply delivered with the scanner Important notice: If there is any damage in the mains cable or the power supply, do not use the device Network cable connector Saavutustenkatu 3, 33720 Tampere, Finland Ocus®40 MGU-00002 User Guide version 7.0 ©2022 Grundium. All rights reserved.

  • Page 9: Power Button Lights

    Register the scanner. As a first step, the scanner needs to be registered in Grundium cloud (https://www.grundium.net). This is done via a computer or a mobile device that has internet connection. These steps do not require the Ocus scanner to be powered on.

  • Page 10: Setting Up The Network Firewall Configuration Based On The Mac-Address

    SETTING UP THE NETWORK FIREWALL CONFIGURATION BASED ON THE MAC -ADDRESS If the network you use has a firewall, make sure that the scanner is allowed to make requests to Grundium Cloud using the outgoing connection to the Internet (TCP ports 80 & 443 for use within same network and optionally TCP port 471 for use from remote network).

  • Page 11: Creating User Account

    Open the browser in your computer or tablet and type the following in the browser’s address field: https://www.grundium.net If you already have a user account to Grundium, login with your account details and move directly to chapter 7.3. Image 5. Login to Grundium cloud.

  • Page 12: Registering A New Ocus Scanner

    WLAN/Wi-Fi parameters specific to your country. The password can be found on the label in Quick guide or at the bottom of the scanner. Saavutustenkatu 3, 33720 Tampere, Finland Ocus®40 MGU-00002 User Guide version 7.0 ©2022 Grundium. All rights reserved.
  • Page 13 Note: After the registration, the Ocus scanner must be switched on and connected to the Internet for it to obtain the registration information. (See section 7.4 and 7.5) Saavutustenkatu 3, 33720 Tampere, Finland Ocus®40 MGU-00002 User Guide version 7.0 ©2022 Grundium. All rights reserved.

  • Page 14: Connecting The Scanner Using An Ethernet Connection

    Note: If there is no access to a device that can be used to create a mobile hotspot, please contact your technical support. Note: The ForOcus password cannot be changed. Saavutustenkatu 3, 33720 Tampere, Finland Ocus®40 MGU-00002 User Guide version 7.0 ©2022 Grundium. All rights reserved.

  • Page 15: Configuring A Wifi- Connection

    Image 12. Log in to the scanner by giving your e-mail address Image 13. Select your team and scanner from the list. and password. Saavutustenkatu 3, 33720 Tampere, Finland Ocus®40 MGU-00002 User Guide version 7.0 ©2022 Grundium. All rights reserved.

  • Page 16: Logging In To The Scanner Using The Offline Mode (Access Point Mode)

    Note: Before it is possible to log in to the Ocus scanner while it is connected with Direct WLAN / Wi-Fi connection (Access Point Mode), the Ocus Scanner needs to be registered to a team, and connected to the internet with a network connection that allows the scanner to connect to the Grundium cloud. (See section 7 “First use”).

  • Page 17: Scanning

    Important notice: Both in local and remote use, remember to keep at least 10 centimeters (4 inches) of free space around the scanner. Do not touch the scanner when the stage is moving. 1. On your computer or tablet, navigate to Grundium.net, select Microscope view, click Eject slide tray, or Change Slide.
  • Page 18 Zoom out, click Add and select one or more areas you want to scan. To adjust the areas further, drag the borders of the areas. Estimated scan time is shown on bottom left corner of the UI. Saavutustenkatu 3, 33720 Tampere, Finland Ocus®40 MGU-00002 User Guide version 7.0 ©2022 Grundium. All rights reserved.
  • Page 19 Note: Ocus 40 optics has been designed for 0.17mm cover slip thickness. As high NA objectives are very sensitive to variation in cover slip thickness, best results can be achieved using precision cover slips. Scanning with different thickness slips or even without a slip is possible but resulting image quality will be degraded.

  • Page 20: Scan Mode

    The following can be set in scan mode view: The amount of scan layers (optical sections) Interval of optical sections Offset of the optical sections stack Saavutustenkatu 3, 33720 Tampere, Finland Ocus®40 MGU-00002 User Guide version 7.0 ©2022 Grundium. All rights reserved.

  • Page 21: Image Adjustments

    Ocus Scanner. Image 21. Image adjustments. Image 22. Image adjustment options. Image 23. Reset all adjustments. Saavutustenkatu 3, 33720 Tampere, Finland Ocus®40 MGU-00002 User Guide version 7.0 ©2022 Grundium. All rights reserved.

  • Page 22: Annotations

    Note: Annotations are visible only when viewing the slides in Ocus scanner – when scanned slides are exported out from Ocus, the annotations are not included in exported files. Saavutustenkatu 3, 33720 Tampere, Finland Ocus®40 MGU-00002 User Guide version 7.0 ©2022 Grundium. All rights reserved.

  • Page 23: Scan Archive

    Select the scans, that you would like to delete. To delete them, click “delete”. To confirm the deletion, click “confirm”. Image 27. Two images selected. Saavutustenkatu 3, 33720 Tampere, Finland Ocus®40 MGU-00002 User Guide version 7.0 ©2022 Grundium. All rights reserved.

  • Page 24: Exporting An Image

    29). You can configure the recipe either from Microscope or Scan Archive view. Image 29. Export destination and format can be selected in export recipe window. Saavutustenkatu 3, 33720 Tampere, Finland Ocus®40 MGU-00002 User Guide version 7.0 ©2022 Grundium. All rights reserved.
  • Page 25 If your file system is not, then it is possible to see time stamps differing from your local time. Saavutustenkatu 3, 33720 Tampere, Finland Ocus®40 MGU-00002 User Guide version 7.0 ©2022 Grundium. All rights reserved.

  • Page 26: Sharing

    “Microscope” and “Scan Archive” views is available. Note: The sharing feature requires a separate license, which can be obtained by contacting your distributor or Grundium. A shared session can be started by clicking Sharing and Start – the session specific link can be copied or emailed to participants.

  • Page 27: Controlling Multiple Scanners

    If you are running several scanners and want to switch from one to another, click the scanner name at the top of the Grundium.net UI to select another scanner. Select the preferred scanner from the drop-down menu. SWITCHING OFF THE SCANNER Note: If you are preparing the scanner for transportation, remove the slide from the scanner before clicking Shutdown.

  • Page 28: Network Settings

    Under the Internet tab, user can view the connection status, current IP address, and DNS server information. 15.1.2 ETHERNET Under the Ethernet tab, user can view the Current IP address, connection status, and access the Static IP settings. Saavutustenkatu 3, 33720 Tampere, Finland Ocus®40 MGU-00002 User Guide version 7.0 ©2022 Grundium. All rights reserved.

  • Page 29: Wlan

    Ocus scanner. 15.1.5 PROXY The proxy can be set up by navigating to Proxy tab under Network settings. Formatting is: http://username:password@host:port Image 35. Proxy settings. Saavutustenkatu 3, 33720 Tampere, Finland Ocus®40 MGU-00002 User Guide version 7.0 ©2022 Grundium. All rights reserved.

  • Page 30: Device Tab

    15.5 LANGUAGE In language settings, the user can set the Ocus Scanner UI language. The UI is currently available both in English and in Chinese. Saavutustenkatu 3, 33720 Tampere, Finland Ocus®40 MGU-00002 User Guide version 7.0 ©2022 Grundium. All rights reserved.

  • Page 31: Team Management

    TEAM MANAGEMENT 16.1 CREATE NEW TEAM Select Team management from the menu under your name in Grundium.net UI, top bar, on the right. Image 37. To create a new team, click Team management from a menu. Click Create team… Name your team. The name must be in lower case and cannot include special characters or spaces.
  • Page 32 Select the Ocus Scanners for the team in the menu. All available Ocus Scanners appear in the menu under “Devices”. Image 39. Select users and Ocus Scanners for the team. Close the menu when done. Saavutustenkatu 3, 33720 Tampere, Finland Ocus®40 MGU-00002 User Guide version 7.0 ©2022 Grundium. All rights reserved.

  • Page 33: Adding New Team Members

    KEEPING THE SOFTWARE UP TO DATE From time to time, Grundium provides software updates. When a new update is available, you will get a notification and instructions on how to update the software. Scanner intended usage flow must be verified after each software update. This...

  • Page 34: Factory Reset

    Note: when removing the cover plate, be careful not to damage any optics in the scanner. Image 42. Remove the cover plate carefully when cleaning the scanner. Saavutustenkatu 3, 33720 Tampere, Finland Ocus®40 MGU-00002 User Guide version 7.0 ©2022 Grundium. All rights reserved.
  • Page 35 Do not use excess force when cleaning the scanner. Note: If there are scan quality issues that the cleaning process does not solve, contact customer support, support@grundium.com Saavutustenkatu 3, 33720 Tampere, Finland Ocus®40 MGU-00002 User Guide version 7.0 ©2022 Grundium. All rights reserved.

  • Page 36: Moving The Scanner To Another Location

    Tape the cardboard box securely, so it does not open during the transit. Note: Always verify the operation and performance of the scanner after transportation. If issues emerge after the transportation, please contact customer support, support@grundium.com Saavutustenkatu 3, 33720 Tampere, Finland Ocus®40 MGU-00002 User Guide version 7.0...

  • Page 37: Product And Safety Information

    Fahrenheit). An airtight carrying case is available for purchase at Grundium or your distributor. • Do not open the scanner or try to change the objective. Only persons authorized by Grundium may repair the product. Unauthorized modifications may damage the scanner.

  • Page 38: Troubleshooting

    Continue. A verification code is emailed to you. Enter the verification code and click Continue. Enter the new password and click Confirm. Note: The Ocus scanner needs to be connected to the internet and to the Grundium cloud for it to receive the updated password information.

  • Page 39: Certifications And Patents

    (1) This device may not cause harmful interference, and (2) This device must accept any interference received, including interference that may cause undesired operation. Any change or modification to the product not expressly approved by Grundium Oy could void the user's authority to operate the device.

  • Page 40: Customer Care And Support

    CUSTOMER CARE AND SUPPORT If you receive your scanner in damaged package or have any problems with the scanner, contact primarily your distributor. You can contact Grundium Ltd. by e-mail at support@grundium.com or by phone on +358 44 749 4455.

This manual is also suitable for:

Mgu-00002

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