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GRUNDIUM Ocus MGU-00001 User Manual

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MGU-00001
USER GUIDE

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Summary of Contents for GRUNDIUM Ocus MGU-00001

  • Page 1 MGU-00001 USER GUIDE...

  • Page 2: Table Of Contents

    Keeping the software up to date.............................. 33 Factory reset .................................... 33 Cleaning the scanner ................................34 Moving the scanner to another location ..........................35 Product and safety information ............................... 36 Hermiankatu 6-8G, 33720 Tampere, Finland Ocus® User Guide version 9.0 ©2021 Grundium. All rights reserved.
  • Page 3 Download does not start automatically when exporting to WebDL ................38 Certifications and patents ................................ 38 Customer care and support..............................39 Manufacturer information ............................... 39 Hermiankatu 6-8G, 33720 Tampere, Finland Ocus® User Guide version 9.0 ©2021 Grundium. All rights reserved.

  • Page 4: Sales Package Contents

    It is recommended to use the latest available browser version. The functionality of Ocus® has been verified with these versions: Google Chrome (93.0) Mozilla Firefox (92.0) and Apple Safari (14.0) Hermiankatu 6-8G, 33720 Tampere, Finland Ocus® User Guide version 9.0 ©2021 Grundium. All rights reserved.

  • Page 5: Introduction To The Ocus® Portable Whole Slide Image Scanner

    INTRODUCTION TO THE OCUS® PORTABLE WHOLE SLIDE IMAGE SCANNER The Grundium Ocus® is a professional imaging instrument for digitizing microscope slides. The device is used in in vitro diagnostics, which aims to gather information about the physiological or pathological state of the patient based on the specimens derived from the human body.

  • Page 6: Technical Specifications

    1 GigE, 802.11 ac WLAN Image formats TIFF, SVS, SZI W x D x H (cm) 18 x 18 x 19 Weight (kg) 3,5 kg Illumination Koehler LED Hermiankatu 6-8G, 33720 Tampere, Finland Ocus® User Guide version 9.0 ©2021 Grundium. All rights reserved.

  • Page 7: Before You Start

    Note: Ocus scanner is a delicate instrument and not designed to withstand by itself stress from shipping/transportation – careful packing is required. See full packing instructions in section 22. Hermiankatu 6-8G, 33720 Tampere, Finland Ocus® User Guide version 9.0 ©2021 Grundium. All rights reserved.

  • Page 8: Scanner Parts

    1. Focus knob 6. Lever 2. Power button 7. Slide holder 3. Objective 8. Slide support glass 4. Cover plate 9. Overview camera 5. X-Y-stage Hermiankatu 6-8G, 33720 Tampere, Finland Ocus® User Guide version 9.0 ©2021 Grundium. All rights reserved.

  • Page 9: Scanner Connectors

    2. Power supply connector. Use only the power supply delivered with the scanner. Important notice: If there is any damage in the mains cable or the power supply, do not use the device. 3. Network cable connector Hermiankatu 6-8G, 33720 Tampere, Finland Ocus® User Guide version 9.0 ©2021 Grundium. All rights reserved.

  • Page 10: Power Button Lights

    During the setup process, assign the scanner to either an existing team or create a new team. A team can have any number of members, but each user must have a valid Grundium account to use the scanner. To join an existing team, ask a team member to add you.

  • Page 11: First Use With A Network Cable Connection

    4. Open the browser in your computer or tablet and type the following in the browser’s address field: www.grundium.net 5. If you already have a user account to Grundium, login with your account details and move directly to step 9.
  • Page 12 If you do not have the account yet, press Register a new user to create a new account and then login. Image 5. Login to Grundium cloud 6. When registering a new user, enter your email address and press Add a new account. Read and Accept Terms and Conditions.
  • Page 13 Image 7. Enter your name and create a password. 8. After registering is done, login to the system with your email address and password (Image 5). 9. Click Register a new device. Hermiankatu 6-8G, 33720 Tampere, Finland Ocus® User Guide version 9.0 ©2021 Grundium. All rights reserved.
  • Page 14 11. Select existing team from the dropdown menu or add a new team by pressing “+“. After entering a valid team name press ADD. Note: Name of the team needs to be in lower case and without spaces. Hermiankatu 6-8G, 33720 Tampere, Finland Ocus® User Guide version 9.0 ©2021 Grundium. All rights reserved.

  • Page 15: First Use With A Wlan/Wi-Fi Connection

    2. Press the power button. The power button flashes red. Once the scanner is switched on and acts as a WLAN/Wi-Fi access point, the power button shows a steady purple light. Hermiankatu 6-8G, 33720 Tampere, Finland Ocus® User Guide version 9.0 ©2021 Grundium. All rights reserved.

  • Page 16: Network Settings

    Change User Settings (e.g. password) Change Team Settings (e.g. team members) Change Device Settings Table 1 Feature availability vs. connection method (X = available, - = not available) Hermiankatu 6-8G, 33720 Tampere, Finland Ocus® User Guide version 9.0 ©2021 Grundium. All rights reserved.

  • Page 17: Logging In To The Scanner

    LOGGING IN TO THE SCANNER WITH INTERNET CONNECTION This connection method works when the power button light is green or yellow. 1. Open the browser on your computer or tablet and go to https://www.grundium.net 2. Enter your e-mail address and password and press Login.

  • Page 18: Logging In To The Scanner With Direct Wlan/Wi-Fi Connection

    (WLAN/Wi-Fi name/SSID and password can be found on the label on the bottom of the device or in the quick guide, see Image 4). 2. Open the browser in your computer or tablet and go to http://www.grundium.net 3. Type your e-mail address and password and press Login (Image 11).
  • Page 19 3. Place the slide in the scanner so that the label is on the right. 4. Push the lever right to secure the slide. 5. Press New scan to take an overview image. Hermiankatu 6-8G, 33720 Tampere, Finland Ocus® User Guide version 9.0 ©2021 Grundium. All rights reserved.
  • Page 20 Tip: The image is saved automatically in the scanner’s hard drive. If you want to give the image a specific name, type the name in the File name field. Hermiankatu 6-8G, 33720 Tampere, Finland Ocus® User Guide version 9.0 ©2021 Grundium. All rights reserved.
  • Page 21 Image 17 Information in Navigator -box when Focus not in range. Hermiankatu 6-8G, 33720 Tampere, Finland Ocus® User Guide version 9.0 ©2021 Grundium. All rights reserved.
  • Page 22 Tip: To quickly remove extra areas from the selected scanning area, press Trim all. The success of trimming depends on the sample, so always confirm the trimming result visually. Hermiankatu 6-8G, 33720 Tampere, Finland Ocus® User Guide version 9.0 ©2021 Grundium. All rights reserved.

  • Page 23: Optical Sectioning (Z-Stack)

    ). The settings view can be entered by pressing Configure button next to Scan mode (see Image 19). The estimated scan time is updated accordingly. Hermiankatu 6-8G, 33720 Tampere, Finland Ocus® User Guide version 9.0 ©2021 Grundium. All rights reserved.
  • Page 24 Image 20 Optical sections can be selected in Configure window Note: The depth figures have the accuracy of 10% and are valid for samples having refractive index of 1.0. Hermiankatu 6-8G, 33720 Tampere, Finland Ocus® User Guide version 9.0 ©2021 Grundium. All rights reserved.

  • Page 25: Image Adjustments

    If there are several users for the scanner, please make sure that the adjustments are set correctly for your use case every time you start using the device. Image 21 Image adjustments Hermiankatu 6-8G, 33720 Tampere, Finland Ocus® User Guide version 9.0 ©2021 Grundium. All rights reserved.
  • Page 26 Image 22 Image adjustment options Image 23 Reset all adjustments Hermiankatu 6-8G, 33720 Tampere, Finland Ocus® User Guide version 9.0 ©2021 Grundium. All rights reserved.

  • Page 27: Viewing The Images

    Common to all three export methods is that the export parameters, meaning destination and format, need to be first configured by using Export recipe (See Image 19 and Image 25). You can configure the recipe either from Microscope or Scan Archive view. Hermiankatu 6-8G, 33720 Tampere, Finland Ocus® User Guide version 9.0 ©2021 Grundium. All rights reserved.
  • Page 28 UTC and will therefore display the time stamps properly in local times. If your file system is not, then it is possible to see time stamps differing from your local time. Hermiankatu 6-8G, 33720 Tampere, Finland Ocus® User Guide version 9.0 ©2021 Grundium. All rights reserved.

  • Page 29: Annotations

    Note: Annotations are visible only when viewing the slides in Ocus device – when scanned slides are exported out from Ocus, the annotations are not included in exported files. Hermiankatu 6-8G, 33720 Tampere, Finland Ocus® User Guide version 9.0 ©2021 Grundium. All rights reserved.

  • Page 30: Sharing

    Image 29. Establishing shared session 2. After receiving the link, the participants can login into the shared session. Image 30. Joining the shared session Hermiankatu 6-8G, 33720 Tampere, Finland Ocus® User Guide version 9.0 ©2021 Grundium. All rights reserved.

  • Page 31: Controlling Multiple Scanners

    Sudden power loss can corrupt scanner’s internal data storage and can potentially lead to data loss or scanner becoming unusable. Hermiankatu 6-8G, 33720 Tampere, Finland Ocus® User Guide version 9.0 ©2021 Grundium. All rights reserved.

  • Page 32: Scanner Settings

    3. Add users to the team from the menu or create new users by clicking Add. An e-mail address is required for each user. Select the devices for the team in the menu. All available devices appear in the menu. Hermiankatu 6-8G, 33720 Tampere, Finland Ocus® User Guide version 9.0 ©2021 Grundium. All rights reserved.

  • Page 33: Adding New Team Members

    All available devices appear in the menu. Image 35. E-mail address of a new team member is required when adding new users. 3. Close the menu when done. Hermiankatu 6-8G, 33720 Tampere, Finland Ocus® User Guide version 9.0 ©2021 Grundium. All rights reserved.

  • Page 34: Keeping The Software Up To Date

    19 KEEPING THE SOFTWARE UP TO DATE From time to time, Grundium provides software updates. When a new update is available, you will get a notification and instructions on how to update the software. Scanner intended usage flow must be verified after each software update.

  • Page 35: Cleaning The Scanner

    Do not let any liquid to sit or pool on the scanner. • Do not use rough towels or clothes to dry the scanner. • Do not use excess force when cleaning the scanner. Hermiankatu 6-8G, 33720 Tampere, Finland Ocus® User Guide version 9.0 ©2021 Grundium. All rights reserved.

  • Page 36: Moving The Scanner To Another Location

    6. Tape the cardboard box securely, so it does not open during the transit. Note: Always verify the operation and performance of the scanner after transportation. Hermiankatu 6-8G, 33720 Tampere, Finland Ocus® User Guide version 9.0 ©2021 Grundium. All rights reserved.

  • Page 37: Product And Safety Information

    Use the scanner in temperatures between 15 and 40 degrees Celsius (59 to 104 Fahrenheit). • Do not open the scanner or try to change the objective. Only persons authorized by Grundium may repair the product. Unauthorized modifications may damage the scanner.
  • Page 38 Type your e-mail address and click Continue. A verification code is emailed to you. Enter the verification code and click Continue. Enter the new password and click Confirm. 25.4 POWER BUTTON LIGHT IS STEADY RED Solution: Device is in error state. Contact your distributor or Grundium’s Support. 25.5 CONNECTING TO INTERNET VIA PROXY Solution: Under settings tab, first select WLAN and then click the link “Advanced settings…”.
  • Page 39 This device may not cause harmful interference, and This device must accept any interference received, including interference that may cause undesired operation. Any change or modification to the product not expressly approved by Grundium Oy could void the user's authority to operate the device.
  • Page 40 27 CUSTOMER CARE AND SUPPORT If you receive your scanner in damaged package or have any problems with the scanner contact primarily your distributor. You can contact Grundium Ltd. by e-mail at support@grundium.com or by phone on +358 44 749 4455.

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