Applied Biosystems Data Explorer 4 Series Manuals

Manuals and User Guides for Applied Biosystems Data Explorer 4 Series. We have 1 Applied Biosystems Data Explorer 4 Series manual available for free PDF download: User Manual

Applied Biosystems Data Explorer 4 Series User Manual

Applied Biosystems Data Explorer 4 Series User Manual (447 pages)

Data Explorer User Guide V4 Series SW User Guide

Brand: Applied Biosystems | Category: Software | Size: 3 MB

Table of Contents

Table of Contents

3
- User Guide
  1
- How to Use this Guide
  11
  - Related Documentation
    14
  - Send Us Your Comments
    14
Chapter 1 ™ Basics

15
Chapter 2 And Spectrum Windows

57
Chapter 3 And Labeling

99
- Peak Detection and Labeling
  99
- Overview
  100
  - Default Peak Detection
    100
  - The Resolution-Based Peak Detection Routine
    101
  - Detection Ranges
    102
- Peak Detection
  104
- Peak List
  135
  - Displaying the Peak List
    135
  - Inserting Peaks in the Peak List
    137
  - Saving the Peak List
    138
  - Sorting, Filtering, and Printing the Peak List
    140
- Deisotoping a Spectrum
  143
  - Sorting, Filtering, and Printing the Peak List
    144
  - When to Use
    144
- Deisotoping a Spectrum
  145
- Peak Labeling
  150
  - Charge State Labels
    151
  - Setting Chromatogram and Spectrum Peak Labels
    152
  - Deleting Labels
    157
  - Setting Custom Peak Labels
    159
- Process that Occurs During Peak Detection, Centroiding, and Integration
  165
- Section 3.1.2, the Resolution-Based Peak Detection Routine)
  165
- Default Peak Detection Settings
  169
Chapter 4 Chromatogram Data

173
Chapter 5 Spectrum Data

205
- Overview
  206
- Creating a Combined Spectrum
  208
- Manual Calibration
  209
- Automatic Calibration
  230
- Centroiding
  240
- Mass Deconvolution (Mariner Data Only)
  241
- Noise Filtering/Smoothing
  246
- Adjusting the Baseline
  249
  - Using Baseline Offset
    249
  - Using Baseline Correction
    251
  - When to Use
    251
  - Using Advanced Baseline Correction
    252
- Truncating a Spectrum
  260
- Converting to a Singly Charged Spectrum (Mariner Data Only)
  263
- Autosaturation Correction (Mariner Data Only)
  266
- Adding and Subtracting Raw or Processed Spectra from the same or Different Data Files (Dual Spectral Trace Arithmetic)
  268
Chapter 6 Applications

271
- Using the Elemental Composition Calculator
  272
  - Determining Elemental Composition
    272
  - Elemental Composition Calculator
    273
  - Setting Limits
    277
- Using the Isotope Calculator
  283
- Using the Mass Resolution Calculator
  283
- Using the Mass Resolution Calculator
  290
- Using the Signal-To-Noise Ratio Calculator
  290
- Using the Signal-To-Noise Ratio Calculator
  293
- Using the Ion Fragmentation Calculator
  295
  - Section 3.5.3, Setting Custom Peak Labels
    297
  - Setting Options
    297
  - Chapter 6 Using Tools and Applications
    298
  - Reference File
    300
- Using the Elemental Targeting Application
  301
- Displaying Results
  303
- Using the Macro Recorder
  304
  - Before Using the Macro Recorder
    304
  - Recording a Macro
    307
  - Assigning Macros to Buttons
    308
  - Running a Macro
    309
  - Using the Menu
    309
  - Deleting a Macro
    311
  - Advanced Macro Editing
    312
  - Visual Basic
    312
  - Importing or Exporting Macros in DATAEXPLORER.VB6
    313
  - Running Macros Automatically When Opening and Closing Files
    315
Chapter 7 Examples

317
- Mariner Data Examples
  318
- Voyager Data Examples
  327
Chapter 8 Voyager Psd Data

339
Table of Contents

363
- Troubleshooting
  363
- Chapter 9 Troubleshooting
  
  364
  - Overview
    364
  - General Troubleshooting
    365
  - Processing, Tools, and Applications Troubleshooting
    368
  - Calibration Troubleshooting
    372
  - Printing Troubleshooting
    376
  - Peak Detection and Labeling Troubleshooting
    377
    
    Section 3.2.2, Strategy for Voyager Peak Detection
    378
    
    Limited Product Warranty
    385
- Appendix A Warranty
  
  386
  - Warranty Claims
    386
  - Warranty Exceptions
    386
- Appendix B Overview of Isotopes
  
  390
- Appendix C Data Explorer Toolbox
  
  390
  - Overview
    390
Appendix C

397
- C.1 Overview
  398
- Overview
  398
- This Appendix Includes:
  398
- Preparing Data before Accessing Macros
  399
  - Before Accessing Macros
    399
- Accessing the Macros
  400
- Using the Ladder Sequencing Toolbox
  401
  - Ladder Sequencing Toolbox
    401
- Using the Peptide Fragmentation Toolbox
  405
  - Peptide Fragmentation Toolbox
    405
- Using the Polymer Analysis Toolbox
  411
- Using MS Fit/Ms Tag Toolbox
  414

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