MSI MS-9988 Manual
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MSI MS-9988 Manual

Com express carrier board
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MS-9988
COM Express Carrier Board


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  • Page 1 MS-9988 COM Express Carrier Board...
  • Page 2 If a problem arses wth your system and no soluton can be obtaned from the user’s manual, please contact your place of purchase or local dstrbutor. Alterna- tvely, please try the followng help resources for further gudance. Visit the MSI website for technical guide, BIOS updates, driver updates, and other information: http://www.msi.com/service/download/ Contact our technical staff at: http://support.msi.com/...
  • Page 3 COM Express Carrer Board COM Express Carrer Board Safety Instructions ￭ Always read the safety nstructons carefully. ￭ Keep ths User’s Manual for future reference. ￭ Keep ths equpment away from humdty. ￭ Lay ths equpment on a relable flat surface before settng t up. ￭...
  • Page 4 Chemical Substances Information In complance wth chemcal substances regulatons, such as the EU REACH Regulaton (Regulaton EC No. 1907/2006 of the European Parlament and the Councl), MSI provdes the nformaton of chemcal substances n products at: http://www.ms.com/html/popup/csr/evmtprtt_pcm.html Battery Information European Unon: Batteres, battery packs, and accumulators should not be dsposed of as unsorted household waste.

  • Page 5: Weee Statement

    MSI wll comply wth the product take back requre- ments at the end of lfe of MSI-branded products that are sold nto the EU. You can return these products to local collecton ponts.

  • Page 6: Table Of Contents

    Preface Contents Copyrght Notce ....................  Trademarks .................... Revson Hstory ....................  Techncal Support .................. Safety Instructons .................. Chemcal Substances Informaton ............... v Battery Informaton ..................v CE Conformty ....................v FCC-A Rado Frequency Interference Statement ......... v WEEE Statement ..................

  • Page 7: Overview

    Overview Thank you for choosng the MS-9988, an excellent COM (computer-on- module) Express Carrer Board. It s a hghly advanced, feature-rch car- rer that offers PCIe and Mn-PCIe expanson. Ths carrer board also features USB 3.0/USB 2.0 ports, a VGA port, DsplayPorts, LVDS nter- face, a parallel port connector, seral port connectors, audo jacks, SATA ports, etc.
  • Page 8 Overvew Overvew Specifications Storage ■ 2 SATA 6Gb/s ports ■ 2 SATA 3Gb/s ports Audio ■ Realtek ALC887 audo codec ■ 3 rear audo jacks ■ 1 front audo connector Graphics ■ VGA, DsplayPort, LVDS nterfaces Rear Panel I/O ■ 3 audo jacks ■...
  • Page 9 COM Express Carrer Board COM Express Carrer Board Expansion Slots ■ 1 PCIe x16 slot ■ 6 PCIe x1 slots ■ 1 Mn-PCIe slot Form Factor ■ ATX form factor: 12” x 9.6” Compliance ■ PICMG COM Express R2.0, Type 6 Environmental ■...

  • Page 10: Board Layout

    Overvew Board Layout Front Audio Connector COM Port Parallel Port Power Jumper GPIO Pin Connector System Fan Header COM Port Connector Power Power Connector AT/ATX Jumper Connector Connector Keyboard/ Mouse Connector System Fan Connector Front Panel Connector Back Panel USB 2.0 Connector Inverter Power...

  • Page 11: Hardware Setup

    Hardware Setup Ths chapter provdes you wth the nformaton about hardware setup procedures. Whle dong the nstallaton, be careful n holdng the com- ponents and follow the nstallaton procedures. For some components, f you nstall n the wrong orentaton, the components wll not work prop- erly.
  • Page 12 Hardware Setup Hardware Setup Components Reference Guide Power Supply ..................2-3 System Power Connector: PWRCONN1 ...........2-3 CPU Power Connector: JPWR1 ..............2-3 Rear Panel I/O ...................2-4 Connector ..................2-6 Fan Power Connector: JSYSFAN1, JSYSFAN2 ........2-6 I2C Bus Connector: JSMB1, JI2C2 ............2-6 GPIO Pn Header: JGPIO1, JGPIO2 ............2-7 Seral ATA Connector: SATA1 ~ SATA4 .............2-7 Keyboard/Mouse Connector: JKBMS1 ............2-8 Front Panel Connector: JFP1 ..............2-8...

  • Page 13: Power Supply

    COM Express Carrer Board COM Express Carrer Board Power Supply System Power Connector: PWRCONN1 Ths connector allows you to connect a power supply. To connect to the power supply, make sure the plug of the power supply s nserted n the proper orenta- ton and the pns are algned.

  • Page 14: Rear Panel I/O

    Hardware Setup Hardware Setup Rear Panel I/O VGA Port Port Line-In Line-Out Mic-In USB 3.0 USB 3.0 DisplayPort DisplayPort USB 2.0 Port Port Port Audio Ports  These audo connectors are used for audo devces. It s easy to dfferentate between audo effects accordng to the color of audo jacks.
  • Page 15 COM Express Carrer Board COM Express Carrer Board LAN Port  The standard RJ-45 LAN jack s for connecton to the Local Area Network (LAN). You can connect a network cable to t. Yellow Green/ Orange Color LED State Condton Left Yellow LAN lnk s not establshed.

  • Page 16: Connector

    Hardware Setup Hardware Setup Connector Fan Power Connector: JSYSFAN1, JSYSFAN2 The fan power connectors support system coolng fan wth +12V. When con- nectng the wre to the connectors, always note that the red wre s the postve and should be connected to the +12V; the black wre s Ground and should be connected to GND.

  • Page 17: Gpio PN Header: Jgpio1, Jgpio2

    COM Express Carrer Board COM Express Carrer Board GPIO Pin Header: JGPIO1, JGPIO2 Ths connector s provded for the General-Purpose Input/Output (GPIO) perph- eral module. Serial ATA Connector: SATA1 ~ SATA4 Ths connector s a hgh-speed Seral ATA nterface port. Each connector can connect to one Seral ATA devce.

  • Page 18: Keyboard/Mouse Connector: Jkbms1

    Hardware Setup Hardware Setup Keyboard/Mouse Connector: JKBMS1 Ths connector s provded to connect a keyboard and a mouse. Front Panel Connector: JFP1 Ths front panel connector s provded for electrcal connecton to the front panel swtches & LEDs and s complant wth Intel Front Panel I/O Connectvty Desgn Gude.

  • Page 19: Usb 2.0 Connector: Jusb1

    COM Express Carrer Board COM Express Carrer Board USB 2.0 Connector: JUSB1 Ths connector, complant wth Intel I/O Connectvty Desgn Gude, s deal for con- nectng hgh-speed USB nterface perpherals such as USB HDD, dgtal cameras, MP3 players, prnters, modems and the lke. Important Note that the pins of VCC and GND must be connected correctly to avoid possible damage.

  • Page 20: Lvds Inverter Connector: Jinvdd1

    Hardware Setup Hardware Setup LVDS Inverter Connector: JINVDD1 The connector s provded for LCD backlght optons. LVDS Connector: JLVDS1 The LVDS (Low Voltage Dfferental Sgnal) connector provdes a dgtal nterface typcally used wth flat panels. After connectng an LVDS nterface flat panel to the JLVDS1, be sure to check the panel datasheet and set the LVDS jumper to proper power voltage.

  • Page 21: Front AudO Connector: Jaud1

    COM Express Carrer Board COM Express Carrer Board Front Audio Connector: JAUD1 Ths connector allows you to connect the front panel audo and s complant wth Intel Front Panel I/O Connectvty Desgn Gude. Parallel Port Connector: JLPT1 The manboard provdes a 26-pn header for connecton to an optonal parallel port bracket.

  • Page 22: Tpm Module Connector: Jdp1

    Hardware Setup Hardware Setup TPM Module Connector: JDP1 Ths connector connects to a TPM (Trusted Platform Module) module (optonal). Please refer to the TPM securty platform manual for more detals. 2-12...

  • Page 23: Com Express Connectors

    COM Express Carrer Board COM Express Carrer Board COM Express Connectors The COM Express connectors are used to nterface the COM Express carrer board to a module board. Connect the COM Express connectors on the carrer board (as ndcated below) to the COM Express connectors on the module board.
  • Page 24 Hardware Setup Hardware Setup Row A Row B Row C Row D GND (FIXED) GND (FIXED) GND (FIXED) GND (FIXED) GBE0_MDI3- GBE0_ACT# GBE0_MDI3+ LPC_FRAME# USB_SSRX0- USB_SSTX0- G B E 0 _ LPC_AD0 USB_SSRX0+ USB_SSTX0+ LINK100# G B E 0 _ LPC_AD1 LINK1000# GBE0_MDI2-...
  • Page 25 COM Express Carrer Board COM Express Carrer Board THRMTRIP# THRM# RSVD RSVD USB6- USB7- D D I 3 _ C T R L - DDI1_PAIR3+ CLK_AUX+ USB6+ USB7+ D D I 3 _ C T R L - DDI1_PAIR3- DATA_AUX- U S B _ 6 _ 7 _ U S B _ 4 _ 5 _ D D I 3 _ D D C _...
  • Page 26 Hardware Setup Hardware Setup PCIE_TX0- PCIE_RX0- PEG_RX5- PEG_TX5- GND (FIXED) GND (FIXED) GND (FIXED) GND (FIXED) LVDS_A0+ LVDS_B0+ PEG_RX6+ PEG_TX6+ LVDS_A0- LVDS_B0- PEG_RX6- PEG_TX6- LVDS_A1+ LVDS_B1+ LVDS_A1- LVDS_B1- PEG_RX7+ PEG_TX7+ LVDS_A2+ LVDS_B2+ PEG_RX7- PEG_TX7- LVDS_A2- LVDS_B2- LV D S _ V D D _ LVDS_B3+ RSVD RSVD...
  • Page 27 COM Express Carrer Board COM Express Carrer Board A104 VCC_12V B104 VCC_12V C104 VCC_12V D104 VCC_12V A105 VCC_12V B105 VCC_12V C105 VCC_12V D105 VCC_12V A106 VCC_12V B106 VCC_12V C106 VCC_12V D106 VCC_12V A107 VCC_12V B107 VCC_12V C107 VCC_12V D107 VCC_12V A108 VCC_12V B108...

  • Page 28: Jumper

    Hardware Setup Hardware Setup Jumper Important Avoid adjusting jumpers when the system is on; it will damage the motherboard. Clear CMOS Jumper: JCMOS1 There s a CMOS RAM onboard that has a power supply from an external battery to keep the data of system confguraton. Wth the CMOS RAM, the system can automatcally boot OS every tme t s turned on.

  • Page 29: Com Port Power Jumper: Vcom1, Vcom2

    COM Express Carrer Board COM Express Carrer Board COM Port Power Jumper: VCOM1, VCOM2 These jumpers specfy the operaton voltage of the onboard seral ports. Ring +12V BIOS Select Jumper: JBIOS1, JBIOS2 Ths jumper s used to enable/dsable the BIOS flash. When you ntend to update the BIOS code, short connect pn#2-3 frst.

  • Page 30: Slot

    Hardware Setup Slot PCIe (Peripheral Component Interconnect Express) Slot The PCI Express slot supports PCIe nterface expanson cards. PCIe x16 slot PCIe x1 slot Mini-PCIe (Peripheral Component Interconnect Express) Slot The Mn-PCIe slot s provded for wreless LAN cards, TV tuner cards, Robson NAND Flash cards and other Mn-PCIe cards.

  • Page 31: Bios Setup

    BIOS Setup Ths chapter provdes nformaton on the BIOS Setup program and allows users to confgure the system for optmal use. Users may need to run the Setup program when: ■ An error message appears on the screen at system startup and re- quests users to run SETUP.

  • Page 32: EnterNg Setup

    BIOS Setup Entering Setup Power on the computer and the system wll start POST (Power On Self Test) process. When the message below appears on the screen, press <DEL> key to enter Setup. Press <DEL> to enter SETUP If the message dsappears before you respond and you stll wsh to enter Setup, restart the system by turnng t OFF and On or pressng the RESET button.
  • Page 33 COM Express Carrer Board Control Keys ← → Select Screen ↑ ↓ Select Item Enter Select Change Opton General Help Prevous Values Optmzed Defaults Save & Ext Ext Getting Help After enterng the Setup menu, the frst menu you wll see s the Man Menu. Main Menu The man menu lsts the setup functons you can make changes to.

  • Page 34: The Menu Bar

    BIOS Setup The Menu Bar ▶ Main Use ths menu for basc system confguratons, such as tme, date, etc. ▶ Advanced Use ths menu to set up the tems of specal enhanced features. ▶ Boot Use ths menu to specfy the prorty of boot devces. ▶...
  • Page 35 COM Express Carrer Board Main ▶ System Date Ths settng allows you to set the system date. The date format s <Day>, <Month> <Date> <Year>. ▶ System Time Ths settng allows you to set the system tme. The tme format s <Hour> <Mnute> <Second>. ▶...

  • Page 36: Advanced

    BIOS Setup Advanced ▶ Full Screen Logo Display Ths BIOS feature determnes f the BIOS should hde the normal POST mes- sages wth the motherboard or system manufacturer’s full-screen logo. When t s enabled, the BIOS wll dsplay the full-screen logo durng the boot-up sequence, hdng normal POST messages.
  • Page 37 COM Express Carrer Board ▶ PCI/PCIE Device Configuration ▶ PCI Latency Timer Ths tem controls how long each PCI devce can hold the bus before another takes over. When set to hgher values, every PCI devce can conduct trans- actons for a longer tme and thus mprove the effectve PCI bandwdth. For better PCI performance, you should set the tem to hgher values.
  • Page 38 BIOS Setup ▶ CPU Configuration ▶ Hyper-Threading The processor uses Hyper-Threadng technology to ncrease transacton rates and reduces end-user response tmes. The technology treats the two cores nsde the processor as two logcal processors that can execute nstruc- tons smultaneously. In ths way, the system performance s hghly mproved. If you dsable the functon, the processor wll use only one core to execute the nstructons.
  • Page 39 COM Express Carrer Board ▶ IT8518 Super IO Configuration ▶ Watch Dog Timer You can enable the system watch-dog tmer, a hardware tmer that generates a reset when the software that t montors does not respond as expected each tme the watch dog polls t. ▶...
  • Page 40 BIOS Setup ▶ IT8518 Smart Fan Configuration (the Compact Module) ▶ Smart CPUFAN Target These settngs enable/dsable the Smart Fan functon. Smart Fan s an excel- lent feature whch wll adjust the CPU/system fan speed automatcally de- pendng on the current CPU/system temperature, avodng the overheatng to damage your system.
  • Page 41 COM Express Carrer Board ▶ Change Settings Ths settng s used to change the address & IRQ settngs of the specfed seral port. ▶ Mode Select Select an operaton mode for the seral port 1. ▶ Parallel Port Ths settng enables/dsables the parallel port. ▶...
  • Page 42 BIOS Setup ▶ H/W Monitor (the Carrier Board) These tems dsplay the current status of all montored hardware devces/ components such as voltages, temperatures and all fans’ speeds. ▶ Smart Fan Configuration (the Carrier Board) ▶ Smart SYSFAN1, SYSFAN2 Target These settngs enable/dsable the Smart Fan functon.

  • Page 43: Boot

    COM Express Carrer Board Boot ▶ Boot Option Priorities Ths settng allows users to set the sequence of boot devces where BIOS at- tempts to load the dsk operatng system. ▶ Hard Drive BBS Priorities Ths settng allows users to set the prorty of the specfed devces. Frst press <Enter>...

  • Page 44: SecurTy

    BIOS Setup Security ▶ Administrator Password Admnstrator Password controls access to the BIOS Setup utlty. ▶ User Password User Password controls access to the system at boot and to the BIOS Setup utlty. ▶ Trusted Computing 3-14...
  • Page 45 COM Express Carrer Board ▶ Security Device Support Ths settng enables/dsables BIOS support for securty devce. When set to [Dsable], the OS wll not show securty devce. TCG EFI protocol and INT1A nterface wll not be avalable. ▶ Intel TXT(LT) Configuration ▶...
  • Page 46 BIOS Setup ▶ ME FW Version, ME Firmware Mode/ Type/ SKU These settngs show the frmware nformaton of the Intel ME (Management Engne). ▶ MDES BIOS Status Code Ths settng enables/dsables the MDES BIOS status code. ▶ Firmware Update Configuration ▶...
  • Page 47 COM Express Carrer Board ▶ AMT Configuration Intel Actve Management Technology (AMT) s hardware-based technology for remotely managng and securng PCs out-of-band. ▶ Serial Port Console Redirection ▶ Console Redirection Console Redrecton operates n host systems that do not have a montor and keyboard attached.
  • Page 48 BIOS Setup ▶ Console Redirection Settings ▶ Terminal Type To operate the system’s console redrecton, you need a termnal support- ng ANSI termnal protocol and a RS-232 null modem cable connected be- tween the host system and termnal(s). Ths settng specfes the type of termnal devce for console redrecton.
  • Page 49 COM Express Carrer Board Chipset ▶ VT-d Intel Vrtualzaton Technology for Drected I/O (Intel VT-d) provdes the capablty to ensure mproved solaton of I/O resources for greater relablty, securty, and avalablty. ▶ Primary Display Ths settng specfes whch s your prmary graphcs adapter. ▶...
  • Page 50 BIOS Setup ▶ LCD Panel Type Ths settng allows you to set the resoluton of the LCD dsplay. ▶ Panel Color Depth Ths tem s used for settng the matchng panel color depth. 3-20...

  • Page 51: Power

    COM Express Carrer Board Power ▶ ACPI Sleep State Ths tem specfes the power savng modes for ACPI functon. If your operatng system supports ACPI, you can choose to enter the Standby mode n S1 (POS) or S3 (STR) fashon through the settng of ths feld. ▶...
  • Page 52 BIOS Setup ▶ OnChip GbE from S5 Ths feld specfes whether the system wll be awakened from power savng modes when actvty or nput sgnal of onchp LAN s detected. ▶ PCIE PME Ths feld specfes whether the system wll be awakened from power savng modes when actvty or nput sgnal of onboard PCIE/PCI PME s detected.
  • Page 53 COM Express Carrer Board Save & Exit ▶ Save Changes and Reset Save changes to CMOS and reset the system. ▶ Discard Changes and Exit Abandon all changes and ext the Setup Utlty. ▶ Discard Changes Abandon all changes. ▶ Load Optimized Defaults Use ths menu to load the default values set by the motherboard manufacturer specfcally for optmal performance of the motherboard.

  • Page 55: Appendix Wdt & Gpio

    Appendix WDT & GPIO Ths appendx provdes the sample codes of WDT (Watch Dog Tmer) and GPIO (General Purpose Input/ Output). 2-A-1...

  • Page 56: Wdt Sample Code

    WDT & GPIO WDT & GPIO WDT Sample Code SIO_INDEX_Port equ 04Eh SIO_DATA_Port equ 04Fh SIO_UnLock_Value equ 087h SIO_Lock_Value equ 0AAh WatchDog_LDN equ 007h WDT_UNIT equ 60h ;60h=second, 68h=minute, 40h=Disabled Watchdog timer WDT_Timer equ 30 ;ex. 30 seconds Sample code: ;Enable config mode dx, SIO_INDEX_Port al, SIO_UnLock_Value...

  • Page 57: Gpio Sample Code

    COM Express Carrer Board COM Express Carrer Board GPIO Sample Code JGPIO1  GPI 0 ~ GPI 3 GPI 0 GPI 1 GPI 2 GPI 3 IO Address SIO GPIO Register Sample code  GPO 0 ~ GPO 3 GPO 0 GPO 1 GPO 2 GPO 3...
  • Page 58 WDT & GPIO WDT & GPIO dx, SIO_INDEX_Port al, GPI_REG dx, al dx, SIO_DATA_Port al, dx ;al bit0 = GPI 0 status Exit SIO dx, SIO_INDEX_Port al, SIO_Lock_Value dx, al #2 : Set GPO 0 to high ; Enable config mode dx, SIO_INDEX_Port al, SIO_UnLock_Value dx, al...
  • Page 59 COM Express Carrer Board COM Express Carrer Board JGPIO2  GPI 0 ~ GPI 3 GPI 0 GPI 1 GPI 2 GPI 3 IO Address EC GPIO Register Sample code  GPO 0 ~ GPO 3 GPO 0 GPO 1 GPO 2 GPO 3 IO Address...
  • Page 60 WDT & GPIO #2 : Set GPO 0 to high ; Enable config mode dx, INDEX_Port al, Read_cmd dx, al short $+2 ;Io_delay short $+2 ;Io_delay dx, DATA_Port al, GPI_REG dx, al dx, DATA_Port al, dx ;clear al bit (GPO 0) al, not GPO0_Value ;set GPO 0 al, GPO0_Value...

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