MSI MS-98H5 User Manual
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MSI MS-98H5 User Manual

MSI MS-98H5 User Manual

Industrial computer board
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MS-98H5
(v1.x) Industrial Computer Board
i

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Summary of Contents for MSI MS-98H5

  • Page 1 MS-98H5 (v1.x) Industrial Computer Board...

  • Page 2: Revision History

    If a problem arises with your system and no solution can be obtained from the user’s manual, please contact your place of purchase or local distributor. Alternatively, please visit the MSI website for technical guide, BIOS updates, driver updates and other information, or contact our technical staff via http://www.

  • Page 3: Safety Instructions

    MS-98H5 Safety Instructions ￭ Always read the safety instructions carefully. ￭ Keep this User’s Manual for future reference. ￭ Keep this equipment away from humidity. ￭ Lay this equipment on a reliable flat surface before setting it up. ￭ The openings on the enclosure are for air convection hence protects the equipment from overheating.

  • Page 4: Chemical Substances Information

    Chemical Substances Information In compliance with chemical substances regulations, such as the EU REACH Regulation (Regulation EC No. 1907/2006 of the European Parliament and the Council), MSI provides the information of chemical substances in products at: http://www.msi.com/html/popup/csr/evmtprtt_pcm.html Battery Information European Union: Batteries, battery packs, and accumulators should not be disposed of as unsorted household waste.

  • Page 5: Ce Conformity

    MSI will comply with the product take back requirements at the end of life of MSI-branded products that are sold into the EU.

  • Page 6: Table Of Contents

    Preface CONTENTS Copyright Notice .................... ii Trademarks ....................ii Revision History .................... ii Technical Support ..................ii Safety Instructions ..................iii Chemical Substances Information ............... iv Battery Information ..................iv CE Conformity ....................v FCC-A Radio Frequency Interference Statement ......... v WEEE Statement ..................
  • Page 7 Overview Thank you for choosing the MS-98H5, an excellent industrial computer board. With low power and low profile design, the MS-98H5 accommodates the Intel Apollo Lake-I / Apollo LakeSeries SoC and supports onboard 4GB ® LPDDR4 Memory (Max. 8GB by option).

  • Page 8: Mainboard Specifications

    Overview Mainboard Specifications Processor (Optional) ■ Apollo Lake-I Series - Intel Atom Processor X5-E3950 (QC 1.6/2.0GHz for Burst/TDP-12W) ® ® - Intel Atom Processor X5-E3940 (QC 1.6/1.8GHz for Burst/TDP-9W) ® ® - Intel Atom Processor X5-E3930 (DC 1.3/1.8GHz for Burst/TDP-6W) ®...
  • Page 9 MS-98H5 Onboard Headers/ Connectors/ Jumpers ■ 1 x 2-pin DC power connector (For Apollo Lake-I Series) ■ 1 x 4-pin DC power connector (For Apollo Lake Series) ■ 1 x System fan connector ■ 1 x SATA 6Gb/s port ■ 1 x SATA power connector ■...

  • Page 10: Mainboard Layout

    Overview Mainboard Layout Standard RJ45 GbE LAN Ports (PoE supported for USB31 Gen 1 Ports Apollo Lake-I Series) HDMI Port DVI-D Port Option RJ45 GbE LAN Ports (PoE supported for USB31 Gen 1 Ports Apollo Lake-I Series) DisplayPort DVI-D Port...
  • Page 11 MS-98H5 Apollo Lake Series Inverter LVDS LVDS Power Power Connector Jumper Back Panel Jumper DC Power Connector LVDS Inverter Connector Clear CMOS Jumper ME Jumper AT/ATX Jumper Nano SIM-Hoders M2 B Key Slot M2 M Key Slot SATA Power Connector...
  • Page 12 Overview Apollo Lake-I Series Inverter LVDS LVDS Power Power Connector Jumper Back Panel Jumper DC Power Connector LVDS Inverter Connector Clear CMOS Jumper ME Jumper AT/ATX Jumper Nano SIM-Hoders M2 B Key Slot M2 M Key Slot SATA Power Connector SATA Port TPM Connector (Back side)

  • Page 13: Hardware Setup 2-1

    Hardware Setup This chapter provides you with the information about hardware setup procedures. While doing the installation, be careful in holding the com- ponents and follow the installation procedures. For some components, if you install in the wrong orientation, the components will not work prop- erly.
  • Page 14 Hardware Setup Components Reference Guide Power Supply 2-3 DC-In Power Connector: JPWR1 (For Apollo Lake-I) .......2-3 DC-In Power Connector: JPWR2 (For Apollo Lake) ........2-3 SATA Power Connector: JSATAPWR1 ............2-3 Rear Panel I/O 2-4 Standard .....................2-4 Option ......................2-4 Connector 2-6 Fan Power Connector: SYSFAN1 ..............2-6 GPIO Connector: JGPIO1 ................2-6 Serial ATA Connector: JSATA1 ..............2-6 Front Panel Connector: JFP1 ..............2-7...

  • Page 15: Power Supply

    MS-98H5 Power Supply DC-In Power Connector: JPWR1 (For Apollo Lake-I) This connector is used to provide power to the motherboard. DC-In Power Connector: JPWR2 (For Apollo Lake) This connector is used to provide power to the motherboard. SATA Power Connector: JSATAPWR1 This connector is used to provide power to SATA devices.

  • Page 16: Rear Panel I/O

    Hardware Setup Rear Panel I/O Standard RJ45 GbE LAN Ports (PoE supported for USB31 Gen 1 Ports Apollo Lake-I Series) HDMI Port DVI-D Port Option RJ45 GbE LAN Ports (PoE supported for USB31 Gen 1 Ports Apollo Lake-I Series) DisplayPort DVI-D Port...
  • Page 17 MS-98H5 DVI-D Port The DVI-D (Digital Visual Interface- Digital) connector can be connected to a LCD monitor, or a CRT monitor with an adapter. To connect a monitor, please refer to the monitor’s manual for more information. HDMI Port The High-Definition Multimedia Interface (HDMI) is an all-digital audio/video in- terface capable of transmitting uncompressed streams.

  • Page 18: Connector

    Hardware Setup Connector Fan Power Connector: SYSFAN1 The fan power connector supports system cooling fans with +12V. When con- necting the wire to the connectors, always note that the red wire is the positive and should be connected to the +12V; the black wire is Ground and should be connected to GND.

  • Page 19: Front Panel Connector: Jfp1

    MS-98H5 Front Panel Connector: JFP1 This front panel connector is provided for electrical connection to the front panel switches & LEDs and is compliant with Intel Front Panel I/O Connectivity Design Guide. LED(+) Voltage(V) Current(mA) Power LPC Debug Port Connector: JTPM1 This connector works as LPC debug port.

  • Page 20: Lvds Connector: Jlvds1

    Hardware Setup LVDS Connector: JLVDS1 The LVDS (Low Voltage Differential Signal) connector provides a digital interface typically used with flat panels. After connecting an LVDS interface flat panel to the JLVDS1, be sure to check the panel datasheet and set the LVDS jumper to proper power voltage.

  • Page 21: Serial Port Connector: Jcom1/Jcom2/Jcom3

    MS-98H5 Serial Port Connector: JCOM1/JCOM2/JCOM3 This connector is a 16550A high speed communications port that sends/receives 16 bytes FIFOs. You can attach serial devices to it through the optional serial port bracket. JCOM1 Connector COM1~2: RS-232/422/485 with 0V/5V/12V RS232 SIGNAL...

  • Page 22: Front Audio Connector: Jaud1

    Hardware Setup JCOM2/3 Connector COM3~6: RS-232 with 0V/5V/12V RS232 SIGNAL DESCRIPTION Data Carrier Detect Signal In SOUT Signal Out Data Terminal Ready Signal Ground Data Set Ready Request To Send Clear To Send VCC/RI Voltage select setting by jumper/Ring Indicator Front Audio Connector: JAUD1 This connector allows you to connect the front panel audio.

  • Page 23: Smbus Connector: Jsmb1

    MS-98H5 SMBus Connector: JSMB1 This connector, known as I2C, is for users to connect System Management Bus (SMBus) interface. CANBus 20 Connector: JCAN1/JCAN2 (For Apollo Lake-I Series) This connector works as a Controller Area Network (CANbus) port to allow micro- controllers and devices to communicate with each other in applications without a host computer.

  • Page 24: Jumper

    Hardware Setup Jumper Important Avoid adjusting jumpers when the system is on; it will damage the motherboard. Clear CMOS Jumper: JCMOS1 There is a CMOS RAM onboard that has a power supply from an external battery to keep the data of system configuration. With the CMOS RAM, the system can automatically boot OS every time it is turned on.

  • Page 25: Serial Port Power Jumper: Jcomp2 (For Com3 & Com4)/ Jcomp3 (For Com5 & Com6)

    MS-98H5 Serial Port Power Jumper: JCOMP2 (for COM3 & COM4)/ JCOMP3 (for COM5 & COM6) The jumper specifies the operation voltage of the specified serial port. +12V +5V (Default ) LVDS Power Jumper: JVDD1 Use this jumper to specify the operation voltage of the LVDS interface flat panel.

  • Page 26: Slot

    Hardware Setup Slot Mini-PCIe (Peripheral Component Interconnect Express) Slot The Mini-PCIe slot is provided for WiFi modules, Bluetooth modules, TV tuner cards and other Mini-PCIe cards. ■ MINI_PCIE1 supports Mini-PCIe and Nano-SIM card. M2_M1: M2 Slot (Key M, 2242) for SSD Please install the M.2 solid-state drive (SSD) into the M.2 slot as shown below.

  • Page 27: Nano Sim Holder

    MS-98H5 Nano SIM Holder This holder is provided for 3G, 4G, LTE, WiFi, BT, CANBus Nano SIM cards. Important When adding or removing expansion cards, make sure that you unplug the power supply first. Meanwhile, read the documentation for the expansion card to configure any necessary hardware or software settings for the expansion card, such as jumpers, switches or BIOS configuration.

  • Page 29: Bios Setup 3-1

    BIOS Setup This chapter provides information on the BIOS Setup program and allows users to configure the system for optimal use. Users may need to run the Setup program when: ■ An error message appears on the screen at system startup and requests users to run SETUP.

  • Page 30: Entering Setup

    BIOS Setup Entering Setup Power on the computer and the system will start POST (Power On Self Test) process. When the message below appears on the screen, press <DEL> or <F2> key to enter Setup. Press <DEL> or <F2> to enter SETUP If the message disappears before you respond and you still wish to enter Setup, restart the system by turning it OFF and On or pressing the RESET button.
  • Page 31 MS-98H5 Control Keys ← → Select Screen ↑ ↓ Select Item Enter Select Change Option General Help Previous Values Optimized Defaults Save & Reset Exit Getting Help After entering the Setup menu, the first menu you will see is the Main Menu.

  • Page 32: The Menu Bar

    BIOS Setup The Menu Bar ▶ Main Use this menu for basic system configurations, such as time, date, etc. ▶ Advanced Use this menu to set up the items of special enhanced features. ▶ Boot Use this menu to specify the priority of boot devices. ▶...

  • Page 33: Main

    MS-98H5 Main ▶ System Date This setting allows you to set the system date. The date format is <Day>, <Month> <Date> <Year>. ▶ System Time This setting allows you to set the system time. The time format is <Hour> <Minute> <Second>.

  • Page 34: Advanced

    BIOS Setup Advanced ▶ Full Screen Logo Display This BIOS feature determines if the BIOS should hide the normal POST messages with the motherboard or system manufacturer’s full-screen logo. When it is enabled, the BIOS will display the full-screen logo during the boot-up sequence, hiding normal POST messages.
  • Page 35 MS-98H5 ▶ Super IO Configuration ▶ Serial Port 1/ 2/ 3/ 4/ 5/ 6 This setting enables/disables the specified serial port. ▶ Change Settings This setting is used to change the address & IRQ settings of the specified serial port.
  • Page 36 BIOS Setup ▶ H/W Monitor These items display the current status of all monitored hardware devices/ components such as voltages, temperatures and all fans’ speeds. ▶ Smart Fan Configuration ▶ Smart SYSFAN Target This setting enables/disables the Smart SYSFAN function. Smart SYSFAN is an excellent feature which will adjust the system fan speed automatically depending on the current system temperature, avoiding the overheating to damage your system.
  • Page 37 MS-98H5 ▶ EIST EIST (Enhanced Intel SpeedStep Technology) allows the system to dynamically adjust processor voltage and core frequency, which can result in decreased average power consumption and decreased average heat production. When disabled, the processor will return the actual maximum CPUID input value of the processor when queried.
  • Page 38 BIOS Setup ▶ GPIO Group Configuration ▶ GPO0 ~ GPO7 These settings control the operation mode of the specified GPIO. 3-10...

  • Page 39: Boot

    MS-98H5 Boot ▶ CSM Support This setting enables/disables the support for Compatibility Support Module, a part of the Intel Platform Innovation Framework for EFI providing the capability to support legacy BIOS interfaces. ▶ OS Selection This setting allows users to select the Operating System.

  • Page 40: Security

    BIOS Setup Security ▶ Administrator Password Administrator Password controls access to the BIOS Setup utility. ▶ User Password User Password controls access to the system at boot and to the BIOS Setup utility. ▶ Trusted Computing ▶ Security Device Support This setting enables/disables BIOS support for security device.
  • Page 41 MS-98H5 ▶ Serial Port Console Redirection (COM1) ▶ Console Redirection Console Redirection operates in host systems that do not have a monitor and keyboard attached. This setting enables/disables the operation of console redirection. When set to [Enabled], BIOS redirects and sends all contents that should be displayed on the screen to the serial COM port for display on the terminal screen.
  • Page 42 BIOS Setup ▶ VT-UTF8 Combo Key Support This setting enables/disables the VT-UTF8 combination key support for ANSI/VT100 terminals. ▶ Recorder Mode, Resolution 100x31 These settings enable/disable the recorder mode and the resolution 100x31. ▶ Putty Keypad PuTTY is a terminal emulator for Windows. This setting controls the numeric keypad for use in PuTTY.

  • Page 43: Chipset

    MS-98H5 Chipset ▶ DVMT Pre-Allocated This setting defines the DVMT pre-allocated memory. Pre-allocated memory is the small amount of system memory made available at boot time by the system BIOS for video. Pre-allocated memory is also known as locked memory. This is because it is "locked"...

  • Page 44: Power

    BIOS Setup Power ▶ Restore AC Power Loss This setting specifies whether your system will reboot after a power failure or interrupt occurs. Available settings are: [Power Off] Leaves the computer in the power off state. [Power On] Leaves the computer in the power on state. [Last State] Restores the system to the previous status before power failure or interrupt occurred.
  • Page 45 MS-98H5 ** Advanced Resume Events Control ** ▶ PCIE PME This field specifies whether the system will be awakened from power saving modes when activity or input signal of onboard PCIE PME is detected. ▶ USB from S3/S4 The item allows the activity of the OnChip GbE/USB device to wake up the sys- tem from S3/S4 sleep state.

  • Page 46: Save & Exit

    BIOS Setup Save & Exit ▶ Save Changes and Reset Save changes to CMOS and reset the system. ▶ Discard Changes and Exit Abandon all changes and exit the Setup Utility. ▶ Discard Changes Abandon all changes. ▶ Load Optimized Defaults Use this menu to load the default values set by the motherboard manufacturer specifically for optimal performance of the motherboard.
  • Page 47 MS-98H5 3-19...
  • Page 48 Appendix GPIO WDT BKL Programming This appendix provides WDT (Watch Dog Timer), GPIO (General Pur- pose Input/ Output), LVDS Backlight, and SMBus Access programming guide. 2-A-1...

  • Page 49: Abstract

    GPIO WDT BKL Programming Abstract Abstract In this document, code examples based on C programming language are provided for customer interest. Inportb, Outportb, Inportl and Outportl are basic functions used for access IO ports and defined as following. Inportb: Read a single 8-bit I/O port. Outportb: Write a single byte to an 8-bit port.

  • Page 50: Gpio Sample Code

    MS-98H5 GPIO Sample Code 1. General Purposed IO – GPIO/DIO The GPIO port configuration addresses are listed in the following table: Name IO Port IO address Name IO Port IO address N_GPI0 N_GPO0 0x42 Bit 0 0x11 Bit 0 N_GPI1...
  • Page 51 GPIO WDT BKL Programming val = SMBus_ReadByte (0x6E, 0x42); // Read value from N_GPI2 port through SMBus. val = val & (1<<2); // Read N_GPI2 address (bit 2). if (val) printf (“Input of N_GPI2 is High”); else printf (“Input of N_GPI2 is Low”); Example: Get N_GPI6 input value.

  • Page 52: Watchdog Timer - Wdt

    MS-98H5 Watchdog Timer – WDT 2. Watchdog Timer – WDT The base address (WDT_BASE) of WDT configuration registers is 0xA10. Set WDT Time Unit val = Inportb (WDT_BASE + 0x05); // Read current WDT setting val = val | 0x08;...
  • Page 53 val = Inportb (WDT_BASE + 0x05); // Read current WDT setting val = val | 0x40; // Set 1 to WDTMOUT_STS (bit 6); Outportb (WDT_BASE + 0x05, val); // Write back WDT setting Watchdog Sample Code SIO_INDEX_Port equ 04Eh SIO_DATA_Port equ 04Fh SIO_UnLock_Value equ 087h...

  • Page 54: Lvds Backlight Brightness Control

    MS-98H5 LVDS Backlight Brightness Control 3. LVDS Backlight Brightness Control The LVDS controller support 17 level of backlight brightness value from 0 (30%) to 16 (100%) and it is accessible through SMBus. The associated access method (SMBus_ReadByte, SMBus_WriteByte) are provided in part 4.

  • Page 55: Smbus Access

    GPIO WDT BKL Programming SMBus Access 4. SMBus Access The base address of SMBus must be known before access. The relevant bus and device information are as following. #define IO_SC 0xCF8 #define IO_DA 0xCFC #define PCIBASEADDRESS 0x80000000 #define PCI_BUS_NUM #define PCI_DEV_NUM #define PCI_FUN_NUM Get SMBus Base Address int SMBUS_BASE;...
  • Page 56 MS-98H5 Outportb (LOWORD ( ) + 0x04, DEVID); //out Base + 04, (DEVID) SMBUS_BASE Outportb (LOWORD ( ) + 0x03, OFFSET); //out Base + 03, OFFSET SMBUS_BASE Outportb (LOWORD ( ) + 0x05, DATA); //out Base + 05, DATA SMBUS_BASE Outportb (LOWORD ( ) + 0x02, 0x48);...

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