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Running Protocols
Confirm Setup & Start Run
Figure 7
4) Collection
At the completion of the run, the system keeps the prepared library solutions in the PCR plate on
and clean up
the thermal cycler module, which is held at 12°C for up to 72 hours. Collect the samples within
that 72-hour period.
1 Wait until the touchscreen indicates that the run is complete. Press OK when you are ready to
collect the library samples from the instrument.
The system transfers the libraries from the PCR plate to the green library strip tube in the
chiller. Allow the instrument-mediated transfer process to complete before continuing.
2 At the completion of the transfer process, open the instrument door and collect the final library
samples (i.e., the green library strip tube) from the chiller module.
3 Re-seal the wells of the strip tube using a fresh foil seal strip, then store at the temperature
recommended in the user manual for your Magnis Target Enrichment Kit.
4 If the optional pre-capture library QC samples were collected for the run, remove the blue QC
sample strip from the chiller module. Process and store the samples as recommended in the
user manual for your Magnis Target Enrichment Kit.
5 Remove all remaining consumables from the instrument deck and dispose of them according
to local guidelines. Close the instrument door.
6 Log out of the software or turn off the instrument.
To log out, press the user name at the bottom of the screen then press Log Out.
To turn off the instrument, press the power button on the front of the instrument.
12
Run Setup Steps
Enter Run Info
Set Up Deck
Verify Labware
Enter Sample Info
Running
Complete
Protocol workflow, with corresponding color of LED status indicators lights
LED: white
LED: green
LED: blue
Magnis NGS Prep System Quick Reference Guide
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